Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq120 96.9 5e-15 seq116 95.1 2e-14 seq84 95.1 2e-14 seq41 95.1 2e-14 seq390 86.0 8e-12 seq77 86.0 8e-12 seq61 86.0 8e-12 >seq120 Length=4136026 Score = 96.9 bits (106), Expect = 5e-15 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 11728 AGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786 |||||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||| Sbjct 3255309 AGTCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 3255250 Query 11787 TCCCCGACGAGGAGG 11801 |||||| || ||||| Sbjct 3255249 TCCCCGCCGGGGAGG 3255235 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 3255307 TCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 3255248 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 3255247 CCCGCCGGGGAG 3255236 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 3255236 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 3255295 Query 139413 TACTAACGAGGATTTT 139428 ||||| |||||| ||| Sbjct 3255296 TACTACCGAGGACTTT 3255311 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||| ||| ||||| |||| ||||| | |||||||||||||||||| || Sbjct 3263883 TCCTCGATAGTATAGCGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGACTC 3263942 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 3263943 CCCGTCGGGGAG 3263954 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||| ||| ||||| |||| ||||| | |||||||||||||||||| || Sbjct 3263883 TCCTCGATAGTATAGCGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGACTC 3263942 Query 11789 CCCGACGAGGAG 11800 |||| || |||| Sbjct 3263943 CCCGTCGGGGAG 3263954 >seq116 Length=2335868 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 2186649 TCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 2186708 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 2186709 CCCGCCGGGGAG 2186720 Score = 93.3 bits (102), Expect = 6e-14 Identities = 65/73 (89%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 2186649 TCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 2186708 Query 11789 CCCGACGAGGAGG 11801 |||| || ||||| Sbjct 2186709 CCCGCCGGGGAGG 2186721 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 2186720 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 2186661 Query 139413 TACTAACGAGGAT 139425 ||||| ||||||| Sbjct 2186660 TACTACCGAGGAT 2186648 >seq84 Length=5494452 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 166397 TCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 166338 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 166337 CCCGCCGGGGAG 166326 Score = 93.3 bits (102), Expect = 6e-14 Identities = 65/73 (89%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 166397 TCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 166338 Query 11789 CCCGACGAGGAGG 11801 |||| || ||||| Sbjct 166337 CCCGCCGGGGAGG 166325 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 166326 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 166385 Query 139413 TACTAACGAGGAT 139425 ||||| ||||||| Sbjct 166386 TACTACCGAGGAT 166398 >seq41 Length=2549405 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 2039069 TCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 2039010 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 2039009 CCCGCCGGGGAG 2038998 Score = 93.3 bits (102), Expect = 6e-14 Identities = 65/73 (89%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 2039069 TCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 2039010 Query 11789 CCCGACGAGGAGG 11801 |||| || ||||| Sbjct 2039009 CCCGCCGGGGAGG 2038997 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 2038998 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 2039057 Query 139413 TACTAACGAGGATTT 139427 ||||| ||||||||| Sbjct 2039058 TACTACCGAGGATTT 2039072 >seq390 Length=553552 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||| ||| ||||| |||| ||||| | |||||||||||||||||| || Sbjct 143038 TCCTCGATAGTATAGCGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGACTC 143097 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 143098 CCCGTCGGGGAG 143109 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||| ||| ||||| |||| ||||| | |||||||||||||||||| || Sbjct 143038 TCCTCGATAGTATAGCGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGACTC 143097 Query 11789 CCCGACGAGGAGG 11801 |||| || ||||| Sbjct 143098 CCCGTCGGGGAGG 143110 >seq77 Length=3081630 Score = 86.0 bits (94), Expect = 8e-12 Identities = 67/79 (85%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| | ||| ||| Sbjct 1976368 CTCCCCGACGGGGAGTCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCGCTA 1976309 Query 139413 TACTAACGAGGATT-TTGG 139430 ||||| |||||||| |||| Sbjct 1976308 TACTATCGAGGATTCTTGG 1976290 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||| ||| ||||| |||| ||||| | |||||||||||||||||| || Sbjct 1976297 TCCTCGATAGTATAGCGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGACTC 1976356 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 1976357 CCCGTCGGGGAG 1976368 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||| ||| ||||| |||| ||||| | |||||||||||||||||| || Sbjct 1976297 TCCTCGATAGTATAGCGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGACTC 1976356 Query 11789 CCCGACGAGGAGG 11801 |||| || ||||| Sbjct 1976357 CCCGTCGGGGAGG 1976369 >seq61 Length=2289012 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||| ||| ||||| |||| ||||| | |||||||||||||||||| || Sbjct 359116 TCCTCGATAGTATAGCGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGACTC 359057 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 359056 CCCGTCGGGGAG 359045 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 139352 ACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACT 139411 ||||| || |||||| |||||||||||||||||| | |||| |||||||| | ||| || Sbjct 359044 ACTCCCCGACGGGGAGTCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCGCT 359103 Query 139412 ATACTAACGAGGA 139424 |||||| |||||| Sbjct 359104 ATACTATCGAGGA 359116 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||| ||| ||||| |||| ||||| | |||||||||||||||||| || Sbjct 359116 TCCTCGATAGTATAGCGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGACTC 359057 Query 11789 CCCGACGAGGAG 11800 |||| || |||| Sbjct 359056 CCCGTCGGGGAG 359045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652810705180320