Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq413 98.7 1e-15 seq13 95.1 1e-14 >seq413 Length=693780 Score = 98.7 bits (108), Expect = 1e-15 Identities = 148/207 (71%), Gaps = 5/207 (2%) Strand=Plus/Minus Query 133471 CTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTAA 133529 |||| || |||||||||||| | ||| | | | || || | || || || ||| || Sbjct 292391 CTTTTTGGATATTGTAATCGGAGAGGGTGCGTCCA-TCTTCTAATTGTTTCCCAGCGAAA 292333 Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589 || || || ||||| || ||||| || ||||||||||| ||||||| ||| | | Sbjct 292332 ATAAGTCGTTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTGCCTTCACATTT 292273 Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649 |||| ||||| | | || || || | ||| | |||||| || || || ||||||||| Sbjct 292272 TCAATAGTGTCTGAAGCTTCTACCTCAAGGGTAATGGTTTTACCCGTGAGGGTTTTTACG 292213 Query 133650 AAAATCTGCA---TGGCTTATTTATTC 133673 || ||||||| |||||||| || || Sbjct 292212 AATATCTGCATCGTGGCTTATCTAATC 292186 >seq13 Length=4112475 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||||||||| || ||||| || | ||| | || || || |||||||| Sbjct 3687237 GTGGACTCTTTCTGGATGTTGTAGTCTGAGAGCGTTCTCCCATCTTCCAGTTGCTTGCCA 3687178 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || | ||||||||||| ||||| || ||||| || || |||||| ||| Sbjct 3687177 GCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCTTCTTTATCTTGAATCTTTGCCTTC 3687118 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| | | ||| || || | ||||| |||||| || || || ||| Sbjct 3687117 ACATTCTCTATTGTGTCTGAAGCCTCTACCTCCAAGGTGATGGTTTTCCCTGTGAGCGTT 3687058 Query 133644 TTTACGAAAATCTGCAT 133660 ||||| || || ||||| Sbjct 3687057 TTTACAAAGATTTGCAT 3687041 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 ||||||||||| || || ||||| || | ||| | ||| ||||| |||||||| Sbjct 3687465 GTGGACTCTTTTTGGATGTTGTAGTCTGAGAGCGTTCTCCCGTCTTCGAGTTGCTTGCCA 3687406 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || | ||||||||||| ||||| || ||||| || || ||||| ||| Sbjct 3687405 GCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCTTCTTTATCTTGTATCTTCGCCTTC 3687346 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| | | || || || | ||||| |||||| || || || ||| Sbjct 3687345 ACGTTCTCTATTGTGTCTGAAGCTTCTACCTCCAGGGTGATGGTTTTCCCTGTGAGCGTT 3687286 Query 133644 TTTACGAAAATCTGCAT 133660 ||||| || |||||||| Sbjct 3687285 TTTACAAAGATCTGCAT 3687269 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||||||||| || ||||| || | ||| | || || || |||||||| Sbjct 3687921 GTGGACTCTTTCTGGATGTTGTAGTCTGAGAGCGTTCTCCCATCTTCCAGTTGCTTGCCA 3687862 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || | ||||||||||| ||||| || ||||| || || |||||| ||| Sbjct 3687861 GCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCTTCTTTATCTTGAATCTTTGCCTTC 3687802 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| | | ||| || || | ||||| |||||| || || || ||| Sbjct 3687801 ACATTCTCTATTGTGTCTGAAGCCTCTACCTCCAAGGTGATGGTTTTCCCTGTGAGCGTT 3687742 Query 133644 TTTACGAAAATCTGCAT 133660 ||||| || || ||||| Sbjct 3687741 TTTACAAAGATTTGCAT 3687725 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| || | || | ||| || || |||||||| Sbjct 3685676 GTGGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTTCTCCCGTCTTCCAGTTGCTTGCCA 3685617 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || | ||||||||||| ||||| || ||||| || || ||||| || Sbjct 3685616 GCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCTTCTTTATCTTGAATCTTCGCTTTC 3685557 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| | | || || || | ||||| |||||| || ||||| ||| Sbjct 3685556 ACGTTCTCTATGGTGTCTGAAGCTTCTACCTCCAGGGTGATGGTTTTCCCAGTCAGTGTT 3685497 Query 133644 TTTACGAAAATCTGCAT 133660 ||||| ||||||||||| Sbjct 3685496 TTTACAAAAATCTGCAT 3685480 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||||||||| || ||||| || | ||| | || || || |||||||| Sbjct 3688149 GTGGACTCTTTCTGGATGTTGTAGTCTGAGAGCGTTCTCCCATCTTCCAGTTGCTTGCCA 3688090 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || | ||||||||||| ||||| || ||||| || || ||||| || Sbjct 3688089 GCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCTTCTTTATCCTGAATCTTCGCTTTC 3688030 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | ||||| | | ||| || || | ||||| |||||| || || || ||| Sbjct 3688029 ACGTTTTCTATTGTGTCTGAAGCCTCTACCTCCAGGGTGATGGTTTTCCCTGTGAGCGTT 3687970 Query 133644 TTTACGAAAATCTGCAT 133660 ||||| || |||||||| Sbjct 3687969 TTTACAAAGATCTGCAT 3687953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483395553348720