Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq193 104 6e-17 seq111 91.5 3e-13 >seq193 Length=3876466 Score = 104 bits (114), Expect = 6e-17 Identities = 141/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 305293 TGATATTGTTATCAGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATC 305352 ||||||||| || ||| | | ||| | ||| || ||||| ||| | |||||||| Sbjct 424941 TGATATTGTCGAGAGGCATCTTAGAGACGACGATGTAGTACTGTTTAATCGACAACCATC 424882 Query 305353 ACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGA-CATTTC 305411 | |||||| | ||| ||||| ||||||| ||||||||| || || |||| | Sbjct 424881 TTTACATAAATTAAGTATCATGGCACATAAAGCAAAAGTATTAGAAC-ATCGAACATTCC 424823 Query 305412 GATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATA 305471 | || |||| | | | || || || |||||||| || |||||||| |||||||||||| Sbjct 424822 GGTTTAATGAATGCGTGTGCACTCCCTATAATGCCGACTTTGATGGTGATGAAATGAATT 424763 Query 305472 TGCATGTACCTCAA 305485 | ||| |||||||| Sbjct 424762 TACATTTACCTCAA 424749 >seq111 Length=5712365 Score = 91.5 bits (100), Expect = 3e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 111055 CACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTA 111114 ||||||| ||||| || |||||||| || ||||||||||||| || || ||||| | Sbjct 2402 CACAAGTGGAAACAGGGACTCCTTACATGCTGTATAAAGATCACTGCAACCGTAAATCAA 2343 Query 111115 ATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTG 111154 |||| ||| ||||||||||||| | |||||||||||| Sbjct 2342 ATCACCAAAATATAGGAACAATTAAATGTAGTAATTTGTG 2303 Score = 84.2 bits (92), Expect = 5e-11 Identities = 197/294 (67%), Gaps = 9/294 (3%) Strand=Plus/Minus Query 110522 TTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGA 110581 |||||||||||| || | || ||| ||| || || |||||||| | | ||| Sbjct 3125 TTGCTTTCTTCTGACGATGACTGAAGATAGTATAGATGGCATTTATGACACATTAAAAAG 3066 Query 110582 AACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTC 110641 ||| ||||| |||| |||| || ||||| || |||||||| |||||| | Sbjct 3065 GTGTGCGCTTATCAGTAAATCAGCTGGTGGCATTGGGCTTAACGTTCATTGTATTCGAGC 3006 Query 110642 AAAAGGAGCA--AATATC-GCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTT 110698 || |||| || |||| | | ||| |||| || | ||| | |||||||| | Sbjct 3005 AAGAGGAACACCAATAGCTGGTACA---CTTGGTGTGTCTAATGGGTTAATTCCAATGAT 2949 Query 110699 AAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGG---TAAGAGAAATGGCTC 110755 || || | || | || || | ||| || |||||||||| ||| ||| || | Sbjct 2948 TAGGGTGTATAATAATACAGCTAGATACGTTGATCAAGGTGGAAATAAAAGACCAGGAGC 2889 Query 110756 ATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACT 110809 |||||| || || | || || |||||| ||||||| |||||||| ||||| || Sbjct 2888 ATTTGCCATATACTTAGAGCCATGGCATGCAGATATTTTTGAATTTTTAGATCT 2835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186749269169058