Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq13 140 8e-28 seq28 125 2e-23 >seq13 Length=4112475 Score = 140 bits (154), Expect = 8e-28 Identities = 155/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 |||||||||||||| ||||| ||||| ||||| || || ||| |||||| | || Sbjct 3687056 AAAACGCTCACAGGGAAAACCATCACCTTGGAGGTAGAGGCTTCAGACACAATAGAGAAT 3687115 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||||||||| |||||||||||| || ||| || | | ||||| Sbjct 3687116 GTGAAGGCAAAGATTCAAGATAAAGAAGGAATTCCTCCAGACCAGCAGCGTTTGATCTTT 3687175 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| |||||||||| || || | | || |||||| ||||||||||||| Sbjct 3687176 GCTGGCAAGCAACTGGAAGATGGGAGAACGCTCTCAGACTACAACATCCAGAAAGAGTCC 3687235 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCGA 206391 || |||||| | || || |||||||| Sbjct 3687236 ACGCTTCACTTGGTGCTGCGACTTCGA 3687262 Score = 140 bits (154), Expect = 8e-28 Identities = 155/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 |||||||||||||| ||||| ||||| ||||| || || ||| |||||| | || Sbjct 3687740 AAAACGCTCACAGGGAAAACCATCACCTTGGAGGTAGAGGCTTCAGACACAATAGAGAAT 3687799 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||||||||| |||||||||||| || ||| || | | ||||| Sbjct 3687800 GTGAAGGCAAAGATTCAAGATAAAGAAGGAATTCCTCCAGACCAGCAGCGTTTGATCTTT 3687859 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| |||||||||| || || | | || |||||| ||||||||||||| Sbjct 3687860 GCTGGCAAGCAACTGGAAGATGGGAGAACGCTCTCAGACTACAACATCCAGAAAGAGTCC 3687919 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCGA 206391 || |||||| | || || |||||||| Sbjct 3687920 ACGCTTCACTTGGTGCTGCGACTTCGA 3687946 Score = 132 bits (146), Expect = 1e-25 Identities = 163/220 (74%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||||||||||| ||||| ||||| |||| || || ||| ||| Sbjct 3687956 CAGATCTTTGTAAAAACGCTCACAGGGAAAACCATCACCCTGGAGGTAGAGGCTTCAGAC 3688015 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| | ||| || ||||| |||||||| || |||||||||||| || ||| || Sbjct 3688016 ACAATAGAAAACGTGAAAGC-GAAGATTCAGGATAAAGAAGGAATTCCTCCAGACCAGCA 3688074 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | ||||| || || ||||| |||||||||| || || | | || |||||| | Sbjct 3688075 GCGTTTGATCTTTGCTGGCAAGCAACTGGAAGATGGGAGAACGCTCTCAGACTACAACAT 3688134 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 |||||||||||| || |||||| | || || |||||||| Sbjct 3688135 CCAGAAAGAGTCCACGCTTCACTTGGTGCTGCGACTTCGA 3688174 Score = 129 bits (142), Expect = 1e-24 Identities = 155/208 (75%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 |||||||||||||| ||||| ||||| |||| || || ||| |||||| | ||| Sbjct 3685723 AAAACGCTCACAGGGAAAACCATCACCCTGGAGGTAGAGGCTTCAGACACAATAGAAAAC 3685782 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| |||||||| || |||||||||||| || ||| || | | ||||| Sbjct 3685783 GTGAAAGC-GAAGATTCAGGATAAAGAAGGAATTCCTCCAGACCAGCAGCGTTTGATCTT 3685841 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || ||||| |||||||||| || || | | || |||||| ||||||||||||| Sbjct 3685842 TGCTGGCAAGCAACTGGAAGATGGGAGAACGCTCTCAGACTACAACATCCAGAAAGAGTC 3685901 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCGA 206391 || |||||| | || || |||||||| Sbjct 3685902 CACGCTTCACTTGGTGCTGCGACTTCGA 3685929 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||||||||||| ||||| ||||| |||| || ||| ||| ||| Sbjct 3687272 CAGATCTTTGTAAAAACGCTCACAGGGAAAACCATCACCCTGGAGGTAGAAGCTTCAGAC 3687331 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || || ||| ||||| ||||| |||||||||||| || ||| || Sbjct 3687332 ACAATAGAGAACGTGAAGGCGAAGATACAAGATAAAGAAGGAATTCCTCCAGACCAGCAG 3687391 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| || || ||||| | ||||| || || || | | || |||||| || Sbjct 3687392 CGTTTGATCTTTGCTGGCAAGCAACTCGAAGACGGGAGAACGCTCTCAGACTACAACATC 3687451 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 || |||||||| || |||||| | || || |||||||| Sbjct 3687452 CAAAAAGAGTCCACGCTTCACTTGGTGCTGCGACTTCGA 3687490 Score = 111 bits (122), Expect = 4e-19 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || || || ||||| ||||| |||| || ||| ||| ||| Sbjct 3685483 CAGATTTTTGTAAAAACACTGACTGGGAAAACCATCACCCTGGAGGTAGAAGCTTCAGAC 3685542 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | || || ||||| || ||||||||| |||||||||||| || ||| || Sbjct 3685543 ACCATAGAGAACGTGAAAGCGAA-GATTCAAGATAAAGAAGGAATTCCTCCAGACCAGCA 3685601 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | ||||| || || ||||| ||||||| || || || | | || |||||| | Sbjct 3685602 GCGTTTGATCTTTGCTGGCAAGCAACTGGAAGACGGGAGAACCCTCTCAGACTACAACAT 3685661 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 |||||| ||||| || |||||| | || || |||||||| Sbjct 3685662 CCAGAAGGAGTCCACGCTTCACTTGGTGCTGCGACTTCGA 3685701 Score = 111 bits (122), Expect = 4e-19 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||||||||| || |||| ||||| |||| || || ||| ||| Sbjct 3687500 CAGATCTTTGTAAAAACGCTCACGGGGAAAATCATCACCCTGGAGGTAGAGGCTTCAGAC 3687559 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| | ||| || ||||| ||||||||||| ||||||||||| || ||| || Sbjct 3687560 ACAATAGAAAACGTGAAAGC-GAAGATTCAAGATAAAGAAGGAATGCCTCCAGACCAGCA 3687618 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | ||||| || || ||||| ||||||| || || || | | || |||||| | Sbjct 3687619 GCGTTTGATCTTTGCTGGCAAGCAACTGGAAGACGGGAGAACCCTCTCAGACTACAACAT 3687678 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 |||||| ||||| || |||||| | || | |||||||| Sbjct 3687679 CCAGAAGGAGTCCACGCTTCACTTGGTGCTTCGACTTCGA 3687718 Score = 102 bits (112), Expect = 2e-16 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||||||||||| ||||| ||||| |||| || || ||| ||| Sbjct 3688184 CAGATCTTTGTAAAAACGCTCACAGGGAAAACCATCACCCTGGAGGTAGAGGCTTCAGAC 3688243 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| | ||| || ||||| |||||||| || |||||||||||| || ||| || Sbjct 3688244 ACAATAGAAAACGTGAAAGC-GAAGATTCAGGATAAAGAAGGAATTCCTCCAGACCAGCA 3688302 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | ||||| || || || || ||||||| || || || | | || |||||| | Sbjct 3688303 GCGTTTGATCTTTGCTGGCAAACAACTGGAAGACGGGAGAACGCTCTCAGACTACAACAT 3688362 Query 206352 CCAGAAAGAGTCTAC 206366 ||| || |||||||| Sbjct 3688363 CCAAAAGGAGTCTAC 3688377 >seq28 Length=1782156 Score = 125 bits (138), Expect = 2e-23 Identities = 144/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || |||||||||||||| |||||||||||||| ||| |||||||| | || Sbjct 1077794 AAGACTCTCACAGGAAAAACCATCACTTTGGAAGTTGAAGCCTCTGACACTATTGAGAAT 1077735 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||| |||||||| || |||||||| || ||| |||||| | |||||| Sbjct 1077734 GTAAAGGCAAAAATTCAAGATAAGGAAGGAATCCCACCAGACCAGCAAAGATTGATCTTC 1077675 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || || | || |||||| | || | | ||||| || | ||||| || ||| Sbjct 1077674 GCTGGTAAACAACTTGAGGATGGACGCACACTTTCAGATTATAATATTCAGAAGGAATCT 1077615 Query 206365 ACTCTTCACCTTGT 206378 ||||| |||||||| Sbjct 1077614 ACTCTCCACCTTGT 1077601 Score = 118 bits (130), Expect = 3e-21 Identities = 153/209 (73%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || || ||||||||||| || ||||||||||| ||| || ||||| | || Sbjct 1076655 CAAGACTCTTACAGGAAAAACCATTACTTTGGAAGTTGAAGCATCGGACACTATTGAGAA 1076596 Query 206244 AGTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 ||||| |||||| ||||| || |||||||||||| ||| || || ||| | |||| Sbjct 1076595 TGTAAAAGCAAAA-ATTCAGGACAAAGAAGGAATTCCGCCAGATCAGCAGAGATTGATCT 1076537 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 | || |||||||| | |||||||| | || | | ||||| ||| | |||||||| | Sbjct 1076536 TTGCTGGAAAGCAACTTGAAGATGGGCGCACACTTTCTGATTATAACATTCAGAAAGAAT 1076477 Query 206363 CTACTCTTCACCTTGTTTTGAGACTTCGA 206391 | |||||||| | ||| | ||||| || Sbjct 1076476 CAACTCTTCATTTAGTTCTTCGACTTAGA 1076448 Score = 116 bits (128), Expect = 9e-21 Identities = 145/196 (74%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || || ||||||||||| |||||||||||||| ||| ||| || || | ||| Sbjct 1077339 CAAGACTCTTACAGGAAAAACCATCACTTTGGAAGTTGAAGCTTCAGATACTATTGAAAA 1077280 Query 206244 AGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 || ||||| ||| |||||||| || |||||||| || || || ||| | || | Sbjct 1077279 TGTCAAAGCTAAA-ATTCAAGATAAGGAAGGAATCCCACCCGATCAGCAGAGATTGATTT 1077221 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 |||| || || || | || || ||| | || | | ||||||||| ||||||| || | Sbjct 1077220 TCGCTGGTAAACAACTCGAGGACGGACGTACACTTTCTGATTACAACATCCAGAAGGAAT 1077161 Query 206363 CTACTCTTCACCTTGT 206378 |||||||||||||||| Sbjct 1077160 CTACTCTTCACCTTGT 1077145 Score = 114 bits (126), Expect = 3e-20 Identities = 144/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || ||||||||||| |||||||||||||| ||| ||| || || | ||| Sbjct 1077566 AAGACTCTTACAGGAAAAACCATCACTTTGGAAGTTGAAGCTTCAGATACTATTGAAAAT 1077507 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| |||||||| || |||||||| || || || ||| | || || Sbjct 1077506 GTCAAAGCTAAA-ATTCAAGATAAGGAAGGAATCCCACCCGATCAGCAGAGATTGATTTT 1077448 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || || || | || || ||| | || | | ||||||||| ||||||| || || Sbjct 1077447 CGCTGGTAAACAACTCGAGGACGGACGTACACTTTCTGATTACAACATCCAGAAGGAATC 1077388 Query 206364 TACTCTTCACCTTGT 206378 ||||||||||||||| Sbjct 1077387 TACTCTTCACCTTGT 1077373 Score = 113 bits (124), Expect = 1e-19 Identities = 144/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || || ||||||||||| |||||||||||||| ||| |||||||| | ||| Sbjct 1076883 CAAGACTCTTACAGGAAAAACCATCACTTTGGAAGTCGAAGCCTCTGACACTATTGAAAA 1076824 Query 206244 AGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 || ||||| ||| |||||||| || |||||||| || || || ||| | |||| Sbjct 1076823 TGTCAAAGCCAAA-ATTCAAGATAAGGAAGGAATCCCCCCAGATCAGCAGAGATTGATCT 1076765 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 |||| || || || | || ||||| | || | | ||||||||| | ||||| || | Sbjct 1076764 TCGCTGGTAAACAACTTGAGGATGGGCGCACACTTTCAGATTACAACATTCAGAAGGAAT 1076705 Query 206363 CTACTCTTCACCTTGT 206378 | || ||||||||||| Sbjct 1076704 CAACACTTCACCTTGT 1076689 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || |||||||||||||||||||| |||||||| ||| || ||||| | || Sbjct 1078022 AAGACTCTCACAGGAAAAACGATCACCTTGGAAGTTGAAGCATCCGACACTATTGAGAAT 1077963 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||| |||||||| || |||||||| || || || ||| | |||||| Sbjct 1077962 GTAAAGGCAAAAATTCAAGATAAGGAAGGAATCCCACCAGATCAGCAGAGATTGATCTTC 1077903 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || || | || ||||| | || | | ||||| || | ||||| || || Sbjct 1077902 GCTGGTAAACAACTTGAGGATGGGCGCACACTTTCAGATTATAATATTCAGAAGGAATCA 1077843 Query 206365 ACTCTTCACCTTGT 206378 || ||||| ||||| Sbjct 1077842 ACACTTCATCTTGT 1077829 Score = 95.1 bits (104), Expect = 3e-14 Identities = 142/197 (72%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || ||||||||||| |||||||||||||| ||| ||| || || | ||| Sbjct 1077110 AAGACTCTTACAGGAAAAACTATCACTTTGGAAGTTGAAGCTTCAGATACTATTGAAAAT 1077051 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| |||||||| || |||||||| || || || ||| | || || Sbjct 1077050 GTCAAAGCTAAA-ATTCAAGATAAGGAAGGAATCCCACCAGATCAGCAGAGATTGATTTT 1076992 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGA--CTTTGGCCGATTACAACGTCCAGAAAGAG 206361 ||| || || || | || || || | | |||| | ||||||||| | || || || Sbjct 1076991 CGCTGGTAAACAACTCGAGGACGGGCGTATACTTT--CTGATTACAACATTCAAAAGGAA 1076934 Query 206362 TCTACTCTTCACCTTGT 206378 ||||| ||||||||||| Sbjct 1076933 TCTACACTTCACCTTGT 1076917 Score = 86.0 bits (94), Expect = 1e-11 Identities = 99/132 (75%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 206247 AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGC 206306 ||||||||| |||||||| || |||||||| || ||| |||||| | |||||||| Sbjct 1078187 AAAGCAAAA-ATTCAAGATAAGGAAGGAATCCCACCAGACCAGCAAAGATTAATCTTCGC 1078129 Query 206307 CGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTAC 206366 || || || | |||||||| | || | | ||||||||| | ||||| || || || Sbjct 1078128 TGGTAAACAACTTGAAGATGGGCGCACACTTTCAGATTACAACATTCAGAAGGAATCAAC 1078069 Query 206367 TCTTCACCTTGT 206378 ||||||||||| Sbjct 1078068 ACTTCACCTTGT 1078057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181757536393938