Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq13 91.5 1e-13 seq28 86.0 6e-12 >seq13 Length=4112475 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| ||||| || | | ||||| || || ||||||||||| | ||| | | Sbjct 3685694 CGCAGCACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTTCTCCCG 3685635 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| || || || || | | |||| | |||||| || |||||||| || ||||||||| Sbjct 3685634 TCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCTTCTTTA 3685575 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| || ||||| | || | || || | | || || || | || | Sbjct 3685574 TCTTGAATCTTCGCTTTCACGTTCTCTATGGTGTCTGAAGCTTCTACCTCCAGGGTGATG 3685515 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| |||||||| ||||||| ||||||||||| Sbjct 3685514 GTTTTCCCAGTCAGTGTTTTTACAAAAATCTGCAT 3685480 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| ||||| || | | |||||||| || ||||||||||| | || | | | Sbjct 3688167 CGCAGCACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGCGTTCTCCCA 3688108 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| || || || || | | |||| | |||||| || |||||||| || ||||||||| Sbjct 3688107 TCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCTTCTTTA 3688048 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| || ||||| | ||| | || || | | ||| || || | || | Sbjct 3688047 TCCTGAATCTTCGCTTTCACGTTTTCTATTGTGTCTGAAGCCTCTACCTCCAGGGTGATG 3687988 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || || || ||||||| || |||||||| Sbjct 3687987 GTTTTCCCTGTGAGCGTTTTTACAAAGATCTGCAT 3687953 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 || || || ||||| | | ||||| ||||| ||||||||||| | || | | Sbjct 3688395 CGTAATACTAAATGCAATGTAGACTCCTTTTGGATGTTGTAGTCTGAGAGCGTTCTCCCG 3688336 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| || ||||| || | | |||| | |||||| || |||||||| || ||||||||| Sbjct 3688335 TCTTCCAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCTTCTTTA 3688276 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| || ||||| | ||| | || || | | ||| || || | || | Sbjct 3688275 TCCTGAATCTTCGCTTTCACGTTTTCTATTGTGTCTGAAGCCTCTACCTCCAGGGTGATG 3688216 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || || || ||||||| || |||||||| Sbjct 3688215 GTTTTCCCTGTGAGCGTTTTTACAAAGATCTGCAT 3688181 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| ||||| || | | |||||||| || ||||||||||| | || | | | Sbjct 3685922 CGCAGCACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGCGTTCTCCCA 3685863 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| || || || || | | |||| | |||||| || |||||||| || ||||||||| Sbjct 3685862 TCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCTTCTTTA 3685803 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| || ||||| | ||| | || || | | ||| || || | || | Sbjct 3685802 TCCTGAATCTTCGCTTTCACGTTTTCTATTGTGTCTGAAGCCTCTACCTCCAGGGTGATG 3685743 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || || || ||||||| || || ||||| Sbjct 3685742 GTTTTCCCTGTGAGCGTTTTTACAAAGATTTGCAT 3685708 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| ||||| || | | |||||||| || ||||||||||| | || | | | Sbjct 3687255 CGCAGCACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGCGTTCTCCCA 3687196 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| || || || || | | |||| | |||||| || |||||||| || ||||||||| Sbjct 3687195 TCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCTTCTTTA 3687136 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| ||| |||| | || | || || | | ||| || || | || | Sbjct 3687135 TCTTGAATCTTTGCCTTCACATTCTCTATTGTGTCTGAAGCCTCTACCTCCAAGGTGATG 3687076 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || || || ||||||| || || ||||| Sbjct 3687075 GTTTTCCCTGTGAGCGTTTTTACAAAGATTTGCAT 3687041 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| ||||| || | | |||||||| || ||||||||||| | || | | | Sbjct 3687939 CGCAGCACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGCGTTCTCCCA 3687880 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| || || || || | | |||| | |||||| || |||||||| || ||||||||| Sbjct 3687879 TCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCTTCTTTA 3687820 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| ||| |||| | || | || || | | ||| || || | || | Sbjct 3687819 TCTTGAATCTTTGCCTTCACATTCTCTATTGTGTCTGAAGCCTCTACCTCCAAGGTGATG 3687760 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || || || ||||||| || || ||||| Sbjct 3687759 GTTTTCCCTGTGAGCGTTTTTACAAAGATTTGCAT 3687725 >seq28 Length=1782156 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 |||| || || ||||||||||| || | || ||| |||||| || |||||||| | Sbjct 1078070 TTGATTCCTTCTGAATGTTGTAATCTGAAAGTGTGCGCCCATCTTCAAGTTGTTTACCAG 1078129 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 |||||| | || || ||||| || || ||||| ||||| ||||||| ||| | Sbjct 1078130 CGAAGATTAATCTTTGCTGGTCTGGTGGGATTCCTTCCTTATCTTGAATTTTTGCTTTGA 1078189 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | ||| | ||||| | | ||| || || | || | ||||||||||||| || | Sbjct 1078190 CATTTTCAATGGTATCTGATGCCTCAACCTCAAGGGTTATTGTTTTACCAGTCAATGTCT 1078249 Query 132108 TTATGAAAATCTGCATG 132124 | | || ||||||||| Sbjct 1078250 TAACAAAGATCTGCATG 1078266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476586308980080