Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq553 95.1 4e-16 seq313 95.1 4e-16 seq282 95.1 4e-16 seq198 86.0 2e-13 >seq553 Length=1043856 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||| ||||| ||||||| | Sbjct 114501 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCAATC 114442 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 114441 CCGGGTTTCGGC 114430 >seq313 Length=180421 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||| ||||||||||| | | Sbjct 40198 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCTGGTTCGATC 40139 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 40138 CCGGGTTTCGGC 40127 >seq282 Length=196190 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||| ||||| ||||||| | Sbjct 110365 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCAATC 110306 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 110305 CCGGGTTTCGGC 110294 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||| ||||| ||||||| | Sbjct 110734 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCAATC 110675 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 110674 CCGGGTTTCGGC 110663 Score = 84.2 bits (92), Expect = 7e-13 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 2772 GAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCG 2831 ||| |||||||||||||| ||| |||||||||||||||||| ||||| ||||||| | || Sbjct 110544 GAAATAGCTCAGTTGGGATAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCAATCTCG 110485 Query 2832 GGCTTCAGC 2840 || ||| || Sbjct 110484 GGTTTCGGC 110476 >seq198 Length=3089385 Score = 86.0 bits (94), Expect = 2e-13 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||| ||||||||| |||||||||||||||||| ||||| ||||| | | Sbjct 1004153 GCCGAAATAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCGATC 1004212 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1004213 CCGGGTTTCGGC 1004224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15848875722810