Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq28 95.1 1e-14 seq13 84.2 2e-11 >seq28 Length=1782156 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | || |||||| | ||||| | ||||| ||||| Sbjct 1077125 ATGCAAATTTTCGTTAAGACTCTTACAGGAAAAACTATCACTTTGGAAGTTGAAGCTTCA 1077066 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| || | || ||| |||||| ||||| || || || || || |||||| Sbjct 1077065 GATACTATTGAAAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCACCAGATCAG 1077006 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || ||| | |||| || || ||||||||||| || | | | | |||||||| Sbjct 1077005 CAGAGATTGATTTTCGCTGGTAAACAACTCGAGGACGGGCGTATACTTTCTGATTACAAC 1076946 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||| ||||| || |||| | || | || ||||||| || Sbjct 1076945 ATTCAAAAGGAATCTACACTTCACCTTGTACTTCGACTGAGAGGTGG 1076899 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | || |||||| | ||||| | |||||||||||| Sbjct 1076897 ATGCAAATCTTCGTCAAGACTCTTACAGGAAAAACCATCACTTTGGAAGTCGAAGCCTCT 1076838 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || ||||| || | || ||| |||||| ||||| || || || || || |||||| Sbjct 1076837 GACACTATTGAAAATGTCAAAGCCAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAG 1076778 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG--AAATGTCAGCGATTACA 25352 || ||| | || | || || |||||||| || |||| | | | ||| ||||||| Sbjct 1076777 CAGAGATTGATCTTCGCTGGTAAACAACTTGAGGATGGGCGCACACTTTCA--GATTACA 1076720 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 | ||||| || ||||| || |||| | || | || ||||||| || Sbjct 1076719 ACATTCAGAAGGAATCAACACTTCACCTTGTACTTCGACTGAGAGGTGG 1076671 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | || |||||| | ||||| | ||||| ||||| Sbjct 1077353 ATGCAAATTTTCGTCAAGACTCTTACAGGAAAAACCATCACTTTGGAAGTTGAAGCTTCA 1077294 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| || | || ||| |||||| ||||| || || || || ||||||||| Sbjct 1077293 GATACTATTGAAAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCACCCGATCAG 1077234 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || ||| | |||| || || ||||||||||| || | | | | |||||||| Sbjct 1077233 CAGAGATTGATTTTCGCTGGTAAACAACTCGAGGACGGACGTACACTTTCTGATTACAAC 1077174 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || || ||||| || |||| | || | ||||||| || || Sbjct 1077173 ATCCAGAAGGAATCTACTCTTCACCTTGTACTCCGATTGAGGGGTGG 1077127 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | || |||||| | ||||| | ||||| ||||| Sbjct 1077581 ATGCAAATCTTCGTTAAGACTCTTACAGGAAAAACCATCACTTTGGAAGTTGAAGCTTCA 1077522 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| || | || ||| |||||| ||||| || || || || ||||||||| Sbjct 1077521 GATACTATTGAAAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCACCCGATCAG 1077462 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || ||| | |||| || || ||||||||||| || | | | | |||||||| Sbjct 1077461 CAGAGATTGATTTTCGCTGGTAAACAACTCGAGGACGGACGTACACTTTCTGATTACAAC 1077402 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || || ||||| || |||| | || | ||||||| || || Sbjct 1077401 ATCCAGAAGGAATCTACTCTTCACCTTGTACTCCGATTGAGGGGTGG 1077355 >seq13 Length=4112475 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||||||||| | || || ||| | ||||| | || || || || Sbjct 3687041 ATGCAAATCTTTGTAAAAACGCTCACAGGGAAAACCATCACCTTGGAGGTAGAGGCTTCA 3687100 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || ||| | || || ||| ||| |||||||| || || || || || ||| Sbjct 3687101 GACACAATAGAGAATGTGAAGGCAAAGATTCAAGATAAAGAAGGAATTCCTCCAGACCAG 3687160 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | | || | | ||||| ||||| ||||||| |||| || || ||||| Sbjct 3687161 CAGCGTTTGATCTTTGCTGGCAAGCAACTGGAAGATGGGAGAACGCTCTCAGACTACAAC 3687220 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 || || ||||| ||||| |||| || ||| | || | ||||||||| Sbjct 3687221 ATCCAGAAAGAGTCCACGCTTCACTTGGTGCTGCGACTTCGAGGAGGAA 3687269 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||||||||| | || || ||| | ||||| | || || || || Sbjct 3687725 ATGCAAATCTTTGTAAAAACGCTCACAGGGAAAACCATCACCTTGGAGGTAGAGGCTTCA 3687784 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || ||| | || || ||| ||| |||||||| || || || || || ||| Sbjct 3687785 GACACAATAGAGAATGTGAAGGCAAAGATTCAAGATAAAGAAGGAATTCCTCCAGACCAG 3687844 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | | || | | ||||| ||||| ||||||| |||| || || ||||| Sbjct 3687845 CAGCGTTTGATCTTTGCTGGCAAGCAACTGGAAGATGGGAGAACGCTCTCAGACTACAAC 3687904 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 || || ||||| ||||| |||| || ||| | || | ||||||||| Sbjct 3687905 ATCCAGAAAGAGTCCACGCTTCACTTGGTGCTGCGACTTCGAGGAGGAA 3687953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445071154944960