Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq13 111 1e-19 seq413 91.5 1e-13 >seq13 Length=4112475 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| || || | | || |||||| || | ||| |||||| || |||||||| || | Sbjct 3685708 TTCCTCCTCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCTG 3685649 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | ||||| | |||| ||||| ||||| || ||||| ||||| ||||||||||| | || Sbjct 3685648 AGAGGGTTCTCCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 3685589 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 ||| | || || || ||||| |||| | | | ||||| | ||| | Sbjct 3685588 GAATTCCTTCTTTATCTTGAATCTTCGCTTTCACGTTCTCTATGGTGTCTGAAGCTTCTA 3685529 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||||| ||||| ||||| || |||| ||||| ||||| |||||||| Sbjct 3685528 CCTCCAGGGTGATGGTTTTCCCAGTCAGTGTTTTTACAAAAATCTGCAT 3685480 Score = 111 bits (122), Expect = 1e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 35525 AACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCG 35584 || || ||||| || ||| ||||||||| |||||||| || | | |||| | |||| Sbjct 3688392 AATACTAAATGCAATGTAGACTCCTTTTGGATGTTGTAGTCTGAGAGCGTTCTCCCGTCT 3688333 Query 35585 TCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCC 35644 ||||| || || || ||||| ||||| ||||||||||| | ||||| | || || ||| Sbjct 3688332 TCCAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCTTCTTTATCC 3688273 Query 35645 ATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTT 35704 ||||| |||| || | | ||||| | || ||||||| ||||| ||| Sbjct 3688272 TGAATCTTCGCTTTCACGTTTTCTATTGTGTCTGAAGCCTCTACCTCCAGGGTGATGGTT 3688213 Query 35705 TTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || || || | ||||| ||||| |||||||||| Sbjct 3688212 TTCCCTGTGAGCGTTTTTACAAAGATCTGCATTC 3688179 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| || || | | || |||||| || | ||| ||| ||||| |||||||| || | Sbjct 3687497 TTCCTCCTCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCTTTTTGGATGTTGTAGTCTG 3687438 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | |||| | |||| || || ||||| || ||||| ||||| ||||||||||| | || Sbjct 3687437 AGAGCGTTCTCCCGTCTTCGAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 3687378 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 ||| | || || || ||||| ||||| | | | ||||| | ||| | Sbjct 3687377 GAATTCCTTCTTTATCTTGTATCTTCGCCTTCACGTTCTCTATTGTGTCTGAAGCTTCTA 3687318 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 |||||| ||||| ||||| || || | ||||| ||||| |||||||||| Sbjct 3687317 CCTCCAGGGTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATCTGCATTC 3687267 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 |||||| || | ||| |||||| || |||||||| || | | ||||| | |||| || Sbjct 3687706 CACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTTCTCCCGTCTTC 3687647 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||| ||||| || ||||| ||||| ||||||||||| | ||| | | || || || Sbjct 3687646 CAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGCATTCCTTCTTTATCTTG 3687587 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 ||||| |||| || | | ||||| | || ||||||| ||||| |||| Sbjct 3687586 AATCTTCGCTTTCACGTTTTCTATTGTGTCTGAAGCCTCTACCTCCAGGGTGATGATTTT 3687527 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 ||||| | ||||| ||||| |||||||||| Sbjct 3687526 CCCCGTGAGCGTTTTTACAAAGATCTGCATTC 3687495 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| || || | | || |||||| || | ||| ||| || || |||||||| || | Sbjct 3687269 TTCCTCCTCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTCTG 3687210 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | |||| | | || ||||| ||||| || ||||| ||||| ||||||||||| | || Sbjct 3687209 AGAGCGTTCTCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 3687150 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 ||| | || || || |||||| ||||| | | | | ||||| | || | Sbjct 3687149 GAATTCCTTCTTTATCTTGAATCTTTGCCTTCACATTCTCTATTGTGTCTGAAGCCTCTA 3687090 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 |||||| ||||| ||||| || || | ||||| ||||| || ||||||| Sbjct 3687089 CCTCCAAGGTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATTTGCATTC 3687039 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| || || | | || |||||| || | ||| ||| || || |||||||| || | Sbjct 3687953 TTCCTCCTCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTCTG 3687894 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | |||| | | || ||||| ||||| || ||||| ||||| ||||||||||| | || Sbjct 3687893 AGAGCGTTCTCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 3687834 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 ||| | || || || |||||| ||||| | | | | ||||| | || | Sbjct 3687833 GAATTCCTTCTTTATCTTGAATCTTTGCCTTCACATTCTCTATTGTGTCTGAAGCCTCTA 3687774 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 |||||| ||||| ||||| || || | ||||| ||||| || ||||||| Sbjct 3687773 CCTCCAAGGTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATTTGCATTC 3687723 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| || || | | || |||||| || | ||| ||| || || |||||||| || | Sbjct 3688181 TTCCTCCTCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTCTG 3688122 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | |||| | | || ||||| ||||| || ||||| ||||| ||||||||||| | || Sbjct 3688121 AGAGCGTTCTCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 3688062 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 ||| | || || ||| ||||| |||| || | | ||||| | || | Sbjct 3688061 GAATTCCTTCTTTATCCTGAATCTTCGCTTTCACGTTTTCTATTGTGTCTGAAGCCTCTA 3688002 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 |||||| ||||| ||||| || || | ||||| ||||| |||||||||| Sbjct 3688001 CCTCCAGGGTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATCTGCATTC 3687951 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| || || | | || |||||| || | ||| ||| || || |||||||| || | Sbjct 3685936 TTCCTCCTCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTCTG 3685877 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | |||| | | || ||||| ||||| || ||||| ||||| ||||||||||| | || Sbjct 3685876 AGAGCGTTCTCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 3685817 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 ||| | || || ||| ||||| |||| || | | ||||| | || | Sbjct 3685816 GAATTCCTTCTTTATCCTGAATCTTCGCTTTCACGTTTTCTATTGTGTCTGAAGCCTCTA 3685757 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 |||||| ||||| ||||| || || | ||||| ||||| || ||||||| Sbjct 3685756 CCTCCAGGGTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATTTGCATTC 3685706 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 |||||| || | ||| |||||| || |||||||| || | | ||||| | |||| || Sbjct 3687022 CACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTTCTCCCGTCTTC 3686963 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAA 35630 ||| ||||| || ||||| ||||| ||||||||||| | ||||| Sbjct 3686962 CAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAA 3686919 >seq413 Length=693780 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 35549 TTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATC 35608 ||||| || |||||||||| | ||| || | || || | || || || || || || Sbjct 292389 TTTTGGATATTGTAATCGGAGAGGGTGCGTCCATCTTCTAATTGTTTCCCAGCGAAAATA 292330 Query 35609 AACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCC 35668 | || ||||| || | ||||| | ||||||||| ||||||| ||||| | || | Sbjct 292329 AGTCGTTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTGCCTTCACATTTTCA 292270 Query 35669 ACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAAT 35728 | ||||| | ||| ||||| | || || ||||||||||| | ||||| || ||| Sbjct 292269 ATAGTGTCTGAAGCTTCTACCTCAAGGGTAATGGTTTTACCCGTGAGGGTTTTTACGAAT 292210 Query 35729 ATCTGCAT 35736 |||||||| Sbjct 292209 ATCTGCAT 292202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450770057304240