Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq111 181 1e-40 seq136 105 9e-18 >seq111 Length=5712365 Score = 181 bits (200), Expect = 1e-40 Identities = 228/313 (73%), Gaps = 0/313 (0%) Strand=Plus/Plus Query 69660 ATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAG 69719 ||| |||||||| ||||| ||||| | ||| || | |||||| | ||||||||| |||| Sbjct 2816 ATTACCTGTATTCTTTTTGAGATCTAAAAATTCAAAAATATCTGCATGCCATGGCTCTAA 2875 Query 69720 ATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTT 69779 ||||| || | |||| |||| ||||||||| || ||||| | |||||| || || || Sbjct 2876 GTATATGGCAAATGCTCCTGGTCTTTTATTTCCACCTTGATCAACGTATCTAGCTGTATT 2935 Query 69780 ATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATA 69839 |||||| || || | ||| ||||| | |||||||| |||| ||| |||| || Sbjct 2936 ATTATACACCCTAATCATTGGAATTAACCCATTAGACACACCAAGTGTACCAGCTATTGG 2995 Query 69840 ACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGAT 69899 |||||||||| |||||| | || || || || || || || |||| ||| Sbjct 2996 TGTTCCTCTTGCTCGAATACAATGAACGTTAAGCCCAATGCCACCAGCTGATTTACTGAT 3055 Query 69900 TAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAG 69959 || ||||| | ||| ||||||||||| || || ||||| ||||| || |||| | || Sbjct 3056 AAGCGCACACCTTTTTAATGTGTCATAAATGCCATCTATACTATCTTCAGTCATCGTCAG 3115 Query 69960 AAGAAAACAGCTA 69972 |||||| || ||| Sbjct 3116 AAGAAAGCAACTA 3128 Score = 154 bits (170), Expect = 2e-32 Identities = 219/308 (71%), Gaps = 0/308 (0%) Strand=Plus/Plus Query 68623 TGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTC 68682 ||||| || ||| || | ||||| |||||| || || || | ||| | | ||| Sbjct 1384 TGAATAGAACCATTATTTGCAATAATCTCATTCTTCATGTCCTCGTCCCAGAGATCTCTT 1443 Query 68683 TCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTA 68742 || |||||| |||| | | ||| ||||| || | ||||||||| ||||| | |||| Sbjct 1444 TCAGTTAAATCTCTTAACAAATGAGGATTCACGACTTGAAATTCTCCAGACAGTACTCGC 1503 Query 68743 CGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCA 68802 | || || || ||||| ||||||||||| ||||| ||||||||||| | ||| || || Sbjct 1504 CTTGTATAGATGTTACTCGTATATGGTTCAACAGACTCATTATTTCCTAAAATCTGTGCG 1563 Query 68803 GTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATT 68862 || || || |||||||||||||| | || ||| |||||||| || ||| || ||| Sbjct 1564 GTAGAAGCTGTTGGCATAGGTGCAATTAACAAAGAATTTCTAACTCCGTGTTTTGCAATT 1623 Query 68863 TTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTAT 68922 || ||||| | |||| ||||| | | || ||| ||| ||||| | ||| ||| Sbjct 1624 TTTTCTTTCAATACACTCCAGTCCCACAATTTAGTTGGGGTAACGTTCCACATATCATAT 1683 Query 68923 TGTAGAAT 68930 || || || Sbjct 1684 TGAAGGAT 1691 Score = 84.2 bits (92), Expect = 3e-11 Identities = 182/268 (68%), Gaps = 6/268 (2%) Strand=Plus/Plus Query 69970 CTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAAC 70029 |||||||| || || | ||| | ||| || | ||| || ||||| || || || Sbjct 3225 CTAGACATCTGCTGCCTCAAAGTACATGCAGAGAAGAGTGTTGGTGATGCATGTGTAAAA 3284 Query 70030 CATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCC-CACTGATGAAT 70088 | ||| || | | |||||||||||| |||||| || || || ||| ||| || Sbjct 3285 TAACGTTCTGATAAGAAATTGTATGTTTCTATAGCTCTGTCAATGTCTTCACC-ATGGAT 3343 Query 70089 TCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTT 70148 | | | || | ||| |||||||| ||||||| || || ||| || ||| || Sbjct 3344 AGCAACTGAAACCCTCATTAACATATGTTGAGGTCTCTCGACAACTTTCCCATGTATCTT 3403 Query 70149 CAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTA--TGAAAAGTCTCTT 70206 | | || | |||| ||||||||||| |||||||| ||||| ||||| ||||| Sbjct 3404 TAGTAAATAACTTCTTTCAAGAGTTTTAAAACCAAAATAATTGTAACTGAAA--TCTCTG 3461 Query 70207 TCGTAAATAATAACAGAATTTAGTTTAT 70234 || ||||| || | ||||||| ||||| Sbjct 3462 TCATAAATTATTGCCGAATTTAATTTAT 3489 Score = 84.2 bits (92), Expect = 3e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 70334 CACTAAATAGtttt-tttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGA 70392 ||||||| |||||| |||||||||||||| ||||| || | || ||||| ||||| | Sbjct 3677 CACTAAA-AGTTTTCTTTGTTTCCTTGTGCAAATTAGAAACTGCAATTCTTGCTGCCAAT 3735 Query 70393 ATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCT 70452 || || || |||||||||| ||||| ||| ||||| |||| || || | ||||| Sbjct 3736 ATTGCGTAATCAGGATGTTTAGTAGTCATAGTGGCTGCAGTTTCGGCTGCAAGATTATCT 3795 Query 70453 AATTC 70457 || || Sbjct 3796 AACTC 3800 >seq136 Length=558006 Score = 105 bits (116), Expect = 9e-18 Identities = 124/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 39883 AACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTG 39942 || ||| ||||| ||||||| | ||||||||||||||| | ||||| || || | || Sbjct 337829 AATATAAGTATCAATTAACAAAGAATACATTTCTGAATGCACATTTTCCATGGCAACTTG 337770 Query 39943 AAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAA 40002 || || ||||| || | ||| || || ||||| || || || |||| ||| | | Sbjct 337769 GAAACCATAAAAGCAACGTGCCTCTGTGATTTGCACTTCCTGACTGAATCGTTCGACAAG 337710 Query 40003 ATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATG 40050 ||| ||||| || |||||||| || ||||| |||||||||||||| Sbjct 337709 ATTCTCATTGACAATTCCATCGGAGGCTGCAAAGAATGCCAATACATG 337662 Score = 89.7 bits (98), Expect = 7e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 40103 TTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTC 40162 || || | ||||||||||||| | |||||||| || || || ||||| |||||||| | | Sbjct 337517 TTAGAAAGATCTACTTCTTCAACAGTCCAAAAAGAAGCTTCGGCCTTCTTGTACATTTGC 337458 Query 40163 CATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGGATG 40222 || ||||| | | || || ||||| | |||||||||| |||||| | | ||| | Sbjct 337457 CAAATATCGGGCCACTGAATAGGAAATACAACAAATCTACGTGGATTATCTTTAAGTAAT 337398 Query 40223 GGTTCCA 40229 ||||||| Sbjct 337397 GGTTCCA 337391 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTC 39372 ||| || ||| || || || || ||||| ||||||||||||||| || || ||||| Sbjct 338777 CATCACCCCCCACTTCTGATACTCTCCAACTTTTTTCTCGAAAAAATTTGTCTTACCTTC 338718 Query 39373 CAATGATATATTTTCCATGAAATCAAACGGATT 39405 ||| ||||||| ||||||||| ||||||||||| Sbjct 338717 CAAAGATATATGTTCCATGAAGTCAAACGGATT 338685 Score = 86.0 bits (94), Expect = 9e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 39452 TCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACT 39511 || |||||||||||||||||| ||| | || ||||||||| ||||| | || || Sbjct 338505 TCCGCAACAAATTCTATGTATTGACACATAAGTTTACAATTCATGCCTATCATTTCGACA 338446 Query 39512 GGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCGATGTT 39571 || | || || || | ||| |||| |||||| || || || || | || || || || Sbjct 338445 GGCAACGCGTCTGTCAAAAATTCTTGTTCGATTTCAACAGCATCCTTAATGATTGACGTG 338386 Query 39572 ACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAGTCACAA 39631 ||| || | ||| || | || ||| |||||||||| || || ||||||||| Sbjct 338385 ACTCGTTCGCAAGATGGTTTCTGTATTATGTGTCTAAACATTAAACACGCAAAGTCACAA 338326 Query 39632 TGTAGGCCCT 39641 |||| |||| Sbjct 338325 TGTAAACCCT 338316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686872926187920