Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq97 114 1e-20 seq140 89.7 4e-13 >seq97 Length=1675059 Score = 114 bits (126), Expect = 1e-20 Identities = 186/266 (70%), Gaps = 4/266 (2%) Strand=Plus/Plus Query 40949 AGGAATGGATCAATTACAGTGCGTTATAGATACGATTAA--ATCCGATCCCGATAGCCGA 41006 ||| || |||||||| || || ||||||| ||| || || | | | ||| | || Sbjct 1318591 AGGCATAGATCAATTGAAGGATGTCATAGATAAGATAAAGAATTCTA--CGAATAACAGA 1318648 Query 41007 CGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCTTGT 41066 | || || ||| || ||||| |||| ||| | | ||||||||| || || || Sbjct 1318649 AGAATCATTATGTCAGCTTGGAATCCAATTGACATTCCACAGATGGCATTACCCCCATGC 1318708 Query 41067 CATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGA 41126 |||| | ||| ||||| ||| |||| || || ||||| ||||| | ||||||||| Sbjct 1318709 CATTGTCTCGTTCAATTTTATGTTAGCAACGGCGAGCTGTCCTGTCAGCTTTATCAAAGA 1318768 Query 41127 TCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTAT 41186 | ||||||||| || || || || ||||||||||| ||| ||||| | || || Sbjct 1318769 AGCGCTGACATGGGTCTTGGAGTACCTTTTAACATAGCATCCTATTCTCTGTTGACTTAC 1318828 Query 41187 ATGATTGCACACGTTACCAATTTAAA 41212 ||| | |||||| |||| || ||||| Sbjct 1318829 ATGCTGGCACACATTACAAACTTAAA 1318854 Score = 111 bits (122), Expect = 1e-19 Identities = 184/263 (70%), Gaps = 6/263 (2%) Strand=Plus/Plus Query 40692 TTTCCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGTTATGG 40751 ||||| || ||||||||||| ||||||||||||| ||| |||||| | ||||| Sbjct 1318260 TTTCCATTATTAACTACAAAACGGGTGTTTTGGAAAGGAGTTGTCGAAGAATTACTATGG 1318319 Query 40752 TTTATCAAAGGTTGTACTAATGCTAAGAAATTATCAGAAAGAGGAGTGCACATTTGGAAT 40811 || || || || | || |||||||| || | |||| | | || | || |||||| Sbjct 1318320 TTCATAAAGGGATCAACAAATGCTAAAGAACTGTCAGCTAAAAATGTTAATATCTGGAAT 1318379 Query 40812 GCGCACAGTTCTAAAACATATTTG---TCTAGCATAGGATTACAAGATAGGGATGAAGGT 40868 || | || || || | | ||| || | ||||| ||||| || || || Sbjct 1318380 GCAAATAGCTCGCGTGAATTTCTAGACTCTTGCG--GCTTTACA-GATAGAGAAGAGGGC 1318436 Query 40869 GATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTATG 40928 || | || ||||||||||||||||||| | |||| ||||| ||||| ||| || |||| Sbjct 1318437 GACTTAGGACCTGTTTATGGATTTCAGTGGAGACACTTTGGTGCAAAGTATAACGATATG 1318496 Query 40929 TACTCTGATTATACCAATAAAGG 40951 |||| ||||| || ||| |||| Sbjct 1318497 CACTCAGATTACACAAATCAAGG 1318519 >seq140 Length=1552015 Score = 89.7 bits (98), Expect = 4e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 19611 TGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACT 19670 ||| ||||| || |||||||| ||||| | || |||| | || ||||| | ||| | Sbjct 490900 TGGTGTACACGATACTGTTGTGAATCAGTTGCTCGCAAAGATCGATGGTGTGGAACAATT 490841 Query 19671 GAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATT 19730 |||||||||| | |||||||| ||||| |||||| ||| | || ||| || || | Sbjct 490840 GAATAATATTCTTGTTATTGGTATGACCAATAGAAGGGATATGATCGACGAGGCTTTGCT 490781 Query 19731 ACGACCCGGTCGGTTGGAAATA 19752 |||||| ||||| || ||| || Sbjct 490780 ACGACCGGGTCGATTAGAAGTA 490759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397435761788890