Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq28 100 2e-16 seq111 98.7 8e-16 seq13 98.7 8e-16 >seq28 Length=1782156 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || |||||||| ||||| || | | ||| |||| ||||| |||||||| Sbjct 1076929 GTAGATTCCTTTTGAATGTTGTAATCAGAAAGTATACGCCCGTCCTCGAGTTGTTTACCA 1076988 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| |||| | | ||| ||||| || || | || || ||||| || || ||| Sbjct 1076989 GCGAAAATCAATCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGAATTTTAGCTTTG 1077048 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | |||| | ||| |||| ||||||||||| | ||| |||| ||| || || ||||| Sbjct 1077049 ACATTTTCAATAGTATCTGAAGCTTCAACTTCCAAAGTGATAGTTTTTCCTGTAAGAGTC 1077108 Query 27231 TTCACAAAGATTTGCATA 27248 || || || ||||||||| Sbjct 1077109 TTAACGAAAATTTGCATA 1077126 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || ||||| ||||| || | ||||| | || || || |||||||| Sbjct 1076701 GTTGATTCCTTCTGAATGTTGTAATCTGAAAGTGTGCGCCCATCCTCAAGTTGTTTACCA 1076760 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || | | ||| ||||| || || | || || ||||| || ||| ||| Sbjct 1076761 GCGAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCCTTATCTTGAATTTTGGCTTTG 1076820 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | |||| | |||||| | |||||| ||||| | ||| || | ||| || || ||||| Sbjct 1076821 ACATTTTCAATAGTGTCAGAGGCTTCGACTTCCAAAGTGATGGTTTTTCCTGTAAGAGTC 1076880 Query 27231 TTCACAAAGATTTGCATA 27248 || || |||||||||||| Sbjct 1076881 TTGACGAAGATTTGCATA 1076898 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 27091 CGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTT 27150 |||| ||||| |||||||| ||| |||| | | ||| ||||| || || | || || | Sbjct 1077425 CGTCCTCGAGTTGTTTACCAGCGAAAATCAATCTCTGCTGATCGGGTGGGATTCCTTCCT 1077484 Query 27151 TATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTA 27210 |||| || || ||| | |||| | ||| |||| ||||||||||| | ||| | Sbjct 1077485 TATCTTGAATTTTAGCTTTGACATTTTCAATAGTATCTGAAGCTTCAACTTCCAAAGTGA 1077544 Query 27211 TAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | | ||| || || ||||| || || |||||||||||| Sbjct 1077545 TGGTTTTTCCTGTAAGAGTCTTAACGAAGATTTGCATA 1077582 Score = 82.4 bits (90), Expect = 6e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 27091 CGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTT 27150 |||| ||||| |||||||| ||| |||| | | ||| ||||| || || | || || | Sbjct 1077197 CGTCCTCGAGTTGTTTACCAGCGAAAATCAATCTCTGCTGATCGGGTGGGATTCCTTCCT 1077256 Query 27151 TATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTA 27210 |||| || || ||| | |||| | ||| |||| ||||||||||| | ||| | Sbjct 1077257 TATCTTGAATTTTAGCTTTGACATTTTCAATAGTATCTGAAGCTTCAACTTCCAAAGTGA 1077316 Query 27211 TAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | | ||| || || ||||| || || || ||||||||| Sbjct 1077317 TGGTTTTTCCTGTAAGAGTCTTGACGAAAATTTGCATA 1077354 >seq111 Length=5712365 Score = 98.7 bits (108), Expect = 8e-16 Identities = 168/243 (69%), Gaps = 3/243 (1%) Strand=Plus/Plus Query 130735 ATCTTTTACCAAATGATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGTA 130794 |||| ||| ||||||| ||| | || |||||| || |||| ||| || || || || Sbjct 1452 ATCTCTTAACAAATGAGGATTCACGACTTGAAATTCTCCAGACAGTACTCGCCTTGTATA 1511 Query 130795 AATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGC 130854 ||||| ||||| | ||||||| || || || || || || || ||||| |||| || Sbjct 1512 GATGTTACTCGTATATGGTTCAACAGACTCATTATTTCCTAAAATCTGTGCGGTAGAAGC 1571 Query 130855 GGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTT 130914 || ||||| ||| | ||| | |||||| | || ||||| | | |||||| || Sbjct 1572 TGTTGGCATAGGTGCAATTAACAAAGAATTTCTAACTCCGTGTTTTGCAATTTTTTCTTT 1631 Query 130915 CAATTCATCCCAATCCCATAGAGAGGTAGGTTTGACATTGTTCCACATATCAAATTGTAG 130974 |||| || ||| ||||| | || || | || ||||||||||||| |||| || Sbjct 1632 CAATACACTCCAGTCCCACAATTTAGTTGGGGTAAC---GTTCCACATATCATATTGAAG 1688 Query 130975 TAT 130977 || Sbjct 1689 GAT 1691 >seq13 Length=4112475 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | |||| ||||| || | ||| || ||||| || || |||||||| Sbjct 3685934 CCTCCTCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTCTGAG 3685875 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | | ||||| || || || || || | || | |||||| || || || || Sbjct 3685874 AGCGTTCTCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 3685815 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || |||||||| ||||| ||||| | |||||| ||||||| || || || Sbjct 3685814 ATTCCTTCTTTATCCTGAATCTTCGCTTTCACGTTTTCTATTGTGTCTGAAGCCTCTACC 3685755 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||| || || || ||||| |||||||||||||| Sbjct 3685754 TCCAGGGTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATTTGCAT 3685708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424912762605936