Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq28 138 7e-28 seq13 134 9e-27 >seq28 Length=1782156 Score = 138 bits (152), Expect = 7e-28 Identities = 149/195 (76%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 ||||| |||||||| |||||||||||||| ||| | ||||||||||||||||| || || Sbjct 1078075 TCCTTCTGAATGTTGTAATCTGAAAGTGTGCGCCCATCTTCAAGTTGTTTACCAGCGAAG 1078134 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GA 34634 ||||| | || ||||| || || | ||| ||||| ||| ||| ||||| ||| || Sbjct 1078135 ATTAATCTTTGCTGGTCTGGTGGGATTCCTTCCTTATCT-TGAATTTTTGCTTTGACATT 1078193 Query 34635 TAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 | ||| || ||| ||| || || | |||||| |||||||| || || || || || Sbjct 1078194 TTCAATGGTATCTGATGCCTCAACCTCAAGGGTTATTGTTTTACCAGTCAATGTCTTAAC 1078253 Query 34695 AAAAATCTGCATGTT 34709 ||| ||||||||||| Sbjct 1078254 AAAGATCTGCATGTT 1078268 Score = 114 bits (126), Expect = 8e-21 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||||||| || | || ||||| ||||| || || |||||||||||||| ||| Sbjct 1076443 CCACCTCTAAGTCGAAGAACTAAATGAAGAGTTGATTCTTTCTGAATGTTATAATCAGAA 1076502 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| ||| | ||||||||||| || || ||||| || || | ||| || || ||||| Sbjct 1076503 AGTGTGCGCCCATCTTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGCGGA 1076562 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGT-CTTCGCTCTCCA 34657 | ||| || ||||| ||| ||||| ||| || | ||| |||| | ||| || | Sbjct 1076563 ATTCCTTCTTTGTC-CTGAATTTTTGCTTTTACATTCTCAATAGTGTCCGATGCT-TCAA 1076620 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| || || ||||| || || | || || || || || ||||| Sbjct 1076621 CTTCCAAAGTAATGGTTTTTCCTGTAAGAGTCTTGACGAAGATTTGCAT 1076669 Score = 114 bits (126), Expect = 8e-21 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || || | || | ||| || || ||||| ||||| |||||||||||| Sbjct 1077811 CCACCTCTCAGTCGGAGTACAAGATGAAGTGTTGATTCCTTCTGAATATTATAATCTGAA 1077870 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| ||| | || |||||||||||||| || || || || | ||| || || || || Sbjct 1077871 AGTGTGCGCCCATCCTCAAGTTGTTTACCAGCGAAGATCAATCTCTGCTGATCTGGTGGG 1077930 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCA 34657 | ||| ||||| ||| ||| ||||| || || | ||| ||||| ||| || | Sbjct 1077931 ATTCCTTCCTTATCT-TGAATTTTTGCCTTTACATTCTCAATAGTGTCGGATGCT-TCAA 1077988 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| ||| |||||||| || || | || || ||||| || ||||| Sbjct 1077989 CTTCCAAGGTGATCGTTTTTCCTGTGAGAGTCTTAACAAAGATTTGCAT 1078037 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || || | || | |||||||| ||||| ||||| |||||||||||| Sbjct 1077583 CCACCTCTCAGTCGAAGTACAAGGTGGAGAGTAGATTCCTTCTGAATATTATAATCTGAA 1077642 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | || |||||||||||||| || || || || | || ||||| || || Sbjct 1077643 AGTGTGCGTCCATCCTCAAGTTGTTTACCAGCGAAGATCAATCTTTGCTGGTCTGGTGGG 1077702 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||| ||||| ||| ||| ||||| || || | ||| ||||| | || || Sbjct 1077703 ATTCCTTCCTTATCT-TGAATTTTTGCCTTTACATTCTCAATAGTGTCAGAGGCTTCAAC 1077761 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || ||||| || || | || || ||||| || ||||| Sbjct 1077762 TTCCAAAGTGATGGTTTTTCCTGTGAGAGTCTTAACAAAGATTTGCAT 1077809 Score = 100 bits (110), Expect = 2e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 ||||| |||||||| |||||||||||||| ||| | || |||||||||||||| || || Sbjct 1076707 TCCTTCTGAATGTTGTAATCTGAAAGTGTGCGCCCATCCTCAAGTTGTTTACCAGCGAAG 1076766 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GA 34634 || || | ||| || || || || | ||| ||||| ||| ||| ||| | ||| || Sbjct 1076767 ATCAATCTCTGCTGATCTGGGGGGATTCCTTCCTTATCT-TGAATTTTGGCTTTGACATT 1076825 Query 34635 TAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 | ||| ||||| | || ||||||| || || ||||| || || | || || || Sbjct 1076826 TTCAATAGTGTCAGAGGCTTCGACTTCCAAAGTGATGGTTTTTCCTGTAAGAGTCTTGAC 1076885 Query 34695 AAAAATCTGCAT 34706 || || ||||| Sbjct 1076886 GAAGATTTGCAT 1076897 Score = 100 bits (110), Expect = 2e-16 Identities = 141/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 |||||||||||||| ||||| |||||| | ||| |||| || ||||||||||| || || Sbjct 1076935 TCCTTTTGAATGTTGTAATCAGAAAGTATACGCCCGTCCTCGAGTTGTTTACCAGCGAAA 1076994 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GA 34634 || || | ||| || || || || | ||| ||||| ||| ||| ||| | ||| || Sbjct 1076995 ATCAATCTCTGCTGATCTGGTGGGATTCCTTCCTTATCT-TGAATTTTAGCTTTGACATT 1077053 Query 34635 TAAAATTGTGTCT-TCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 | ||| || ||| ||| || ||||||| || || ||||| || || | || || | Sbjct 1077054 TTCAATAGTATCTGAAGCT-TCAACTTCCAAAGTGATAGTTTTTCCTGTAAGAGTCTTAA 1077112 Query 34694 CAAAAATCTGCAT 34706 | ||||| ||||| Sbjct 1077113 CGAAAATTTGCAT 1077125 Score = 91.5 bits (100), Expect = 9e-14 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 ||||| || ||||| ||||| |||||||| || |||| || ||||||||||| || || Sbjct 1077163 TCCTTCTGGATGTTGTAATCAGAAAGTGTACGTCCGTCCTCGAGTTGTTTACCAGCGAAA 1077222 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GA 34634 || || | ||| || || || || | ||| ||||| ||| ||| ||| | ||| || Sbjct 1077223 ATCAATCTCTGCTGATCGGGTGGGATTCCTTCCTTATCT-TGAATTTTAGCTTTGACATT 1077281 Query 34635 TAAAATTGTGTCT-TCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 | ||| || ||| ||| || ||||||| || || ||||| || || | || || | Sbjct 1077282 TTCAATAGTATCTGAAGCT-TCAACTTCCAAAGTGATGGTTTTTCCTGTAAGAGTCTTGA 1077340 Query 34694 CAAAAATCTGCAT 34706 | ||||| ||||| Sbjct 1077341 CGAAAATTTGCAT 1077353 Score = 86.0 bits (94), Expect = 4e-12 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 ||||| || ||||| ||||| |||||||| || |||| || ||||||||||| || || Sbjct 1077391 TCCTTCTGGATGTTGTAATCAGAAAGTGTACGTCCGTCCTCGAGTTGTTTACCAGCGAAA 1077450 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GA 34634 || || | ||| || || || || | ||| ||||| ||| ||| ||| | ||| || Sbjct 1077451 ATCAATCTCTGCTGATCGGGTGGGATTCCTTCCTTATCT-TGAATTTTAGCTTTGACATT 1077509 Query 34635 TAAAATTGTGTCT-TCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 | ||| || ||| ||| || ||||||| || || ||||| || || | || || | Sbjct 1077510 TTCAATAGTATCTGAAGCT-TCAACTTCCAAAGTGATGGTTTTTCCTGTAAGAGTCTTAA 1077568 Query 34694 CAAAAATCTGCAT 34706 | || || ||||| Sbjct 1077569 CGAAGATTTGCAT 1077581 >seq13 Length=4112475 Score = 134 bits (148), Expect = 9e-27 Identities = 172/232 (74%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||| |||| |||||| || || ||| |||||| || ||||| || ||||| Sbjct 3685706 CCTCCTCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCTGAG 3685647 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | ||||||| ||||| || || ||||| || |||||||| ||||| || || Sbjct 3685646 AGGGTTCTCCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 3685587 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTC-GCTCTCCA 34657 | ||| || || ||| ||||| | ||| ||| | || |||||| ||| || | Sbjct 3685586 ATTCCTTCTTTATCTTGAATCTTC-GCTTTCACGTTCTCTATGGTGTCTGAAGCT-TCTA 3685529 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 | |||| ||| || ||||| || || | ||||| |||||||||||||| || Sbjct 3685528 CCTCCAGGGTGATGGTTTTCCCAGTCAGTGTTTTTACAAAAATCTGCATATT 3685477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314713574165474