Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq413 154 4e-32 seq13 149 1e-30 seq28 127 5e-24 seq185 111 4e-19 seq691 100 7e-16 seq84 91.5 4e-13 seq17 84.2 5e-11 >seq413 Length=693780 Score = 154 bits (170), Expect = 4e-32 Identities = 148/190 (78%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 225524 CTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGA 225583 ||||||||| ||||||||||| | || | |||||||||| || ||||||||||| | Sbjct 292391 CTTTTTGGATATTGTAATCGGAGAGGGTGCGTCCATCTTCTAATTGTTTCCCAGCGAAAA 292332 Query 225584 TAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTT 225643 |||||||||| || || || ||||| ||||||||||| ||||||||| ||||||| || Sbjct 292331 TAAGTCGTTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTGCCTTCACATTTT 292272 Query 225644 CGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGA 225703 | || |||||||| | ||| || || | || || || || ||||| | ||||||| || Sbjct 292271 CAATAGTGTCTGAAGCTTCTACCTCAAGGGTAATGGTTTTACCCGTGAGGGTTTTTACGA 292212 Query 225704 ACACTTGCAT 225713 | | ||||| Sbjct 292211 ATATCTGCAT 292202 >seq13 Length=4112475 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||||| ||| || | ||| || ||||| ||||| |||| ||||| || | | ||| Sbjct 3687261 CGAAGTCGCAGCACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGCGTT 3687202 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 ||||||||||| || ||||| ||||| ||||| | || || ||||| || ||||| ||| Sbjct 3687201 CTCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCT 3687142 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || || ||||| |||||| ||||||| || || |||||||| | || || || || Sbjct 3687141 TCTTTATCTTGAATCTTTGCCTTCACATTCTCTATTGTGTCTGAAGCCTCTACCTCCAAG 3687082 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| || || || || | ||||||| || | ||||||| Sbjct 3687081 GTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATTTGCATT 3687040 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||||| ||| || | ||| || ||||| ||||| |||| ||||| || | | ||| Sbjct 3687945 CGAAGTCGCAGCACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGCGTT 3687886 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 ||||||||||| || ||||| ||||| ||||| | || || ||||| || ||||| ||| Sbjct 3687885 CTCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCT 3687826 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || || ||||| |||||| ||||||| || || |||||||| | || || || || Sbjct 3687825 TCTTTATCTTGAATCTTTGCCTTCACATTCTCTATTGTGTCTGAAGCCTCTACCTCCAAG 3687766 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| || || || || | ||||||| || | ||||||| Sbjct 3687765 GTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATTTGCATT 3687724 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||||| ||| || | ||| || ||||| ||||| |||| ||||| || | | ||| Sbjct 3685928 CGAAGTCGCAGCACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGCGTT 3685869 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 ||||||||||| || ||||| ||||| ||||| | || || ||||| || ||||| ||| Sbjct 3685868 CTCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCT 3685809 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || || || || ||||| ||||| ||| || |||||||| | || || || | Sbjct 3685808 TCTTTATCCTGAATCTTCGCTTTCACGTTTTCTATTGTGTCTGAAGCCTCTACCTCCAGG 3685749 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| || || || || | ||||||| || | ||||||| Sbjct 3685748 GTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATTTGCATT 3685707 Score = 129 bits (142), Expect = 1e-24 Identities = 163/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||||| ||| || | ||| || ||||| || || |||| ||||| || | | ||| Sbjct 3685700 CGAAGTCGCAGCACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTT 3685641 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 ||||| ||||| || ||||| ||||| ||||| | || || ||||| || ||||| ||| Sbjct 3685640 CTCCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCT 3685581 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || || ||||| ||||| ||||| || ||||||||||| | ||| || || | Sbjct 3685580 TCTTTATCTTGAATCTTCGCTTTCACGTTCTCTATGGTGTCTGAAGCTTCTACCTCCAGG 3685521 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || || || |||| ||||||| || | ||||| || Sbjct 3685520 GTGATGGTTTTCCCAGTCAGTGTTTTTACAAAAATCTGCATATT 3685477 Score = 125 bits (138), Expect = 2e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||||| ||| || | ||| || ||||| ||||| |||| ||||| || | | ||| Sbjct 3688173 CGAAGTCGCAGCACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGCGTT 3688114 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 ||||||||||| || ||||| ||||| ||||| | || || ||||| || ||||| ||| Sbjct 3688113 CTCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCT 3688054 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || || || || ||||| ||||| ||| || |||||||| | || || || | Sbjct 3688053 TCTTTATCCTGAATCTTCGCTTTCACGTTTTCTATTGTGTCTGAAGCCTCTACCTCCAGG 3687994 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| || || || || | ||||||| || | |||||| Sbjct 3687993 GTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATCTGCATT 3687952 >seq28 Length=1782156 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 |||| || |||||||||||||| ||||| || || | ||| ||||| | | || | Sbjct 1077592 AGTCGAAGTACAAGGTGGAGAGTAGATTCCTTCTGAATATTATAATCTGAAAGTGTGCGT 1077651 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 ||||| || || || || ||||||||||| | || ||| ||||| || || || |||||| Sbjct 1077652 CCATCCTCAAGTTGTTTACCAGCGAAGATCAATCTTTGCTGGTCTGGTGGGATTCCTTCC 1077711 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 || ||||| || ||| ||| ||| || || ||||| |||| ||| || || || ||| Sbjct 1077712 TTATCTTGAATTTTTGCCTTTACATTCTCAATAGTGTCAGAGGCTTCAACTTCCAAAGTG 1077771 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || || | ||| || | || | |||||| Sbjct 1077772 ATGGTTTTTCCTGTGAGAGTCTTAACAAAGATTTGCAT 1077809 Score = 118 bits (130), Expect = 3e-21 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 |||| || |||||||| || || ||||| || || | |||||||| | | || | | Sbjct 1076680 AGTCGAAGTACAAGGTGAAGTGTTGATTCCTTCTGAATGTTGTAATCTGAAAGTGTGCGC 1076739 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 ||||| || || || || ||||||||||| | || || || || || || || |||||| Sbjct 1076740 CCATCCTCAAGTTGTTTACCAGCGAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCC 1076799 Query 225616 TTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 || ||||| || ||| || || ||| ||| || ||||| |||| ||| || || || || Sbjct 1076800 TTATCTTGAAT-TTTGGCTTTGACATTTTCAATAGTGTCAGAGGCTTCGACTTCCAAAGT 1076858 Query 225675 GATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| || || || || | ||| || | ||| | |||||| Sbjct 1076859 GATGGTTTTTCCTGTAAGAGTCTTGACGAAGATTTGCAT 1076897 Score = 118 bits (130), Expect = 3e-21 Identities = 161/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 |||| || |||||||| || || ||||| || || | |||||||| | | || | | Sbjct 1078048 AGTCGGAGTACAAGGTGAAGTGTTGATTCCTTCTGAATGTTGTAATCTGAAAGTGTGCGC 1078107 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||||||| || || || ||||||||||| | || ||| ||||| || || || |||||| Sbjct 1078108 CCATCTTCAAGTTGTTTACCAGCGAAGATTAATCTTTGCTGGTCTGGTGGGATTCCTTCC 1078167 Query 225616 TTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 || ||||| || |||||| || ||| ||| ||||| ||||| | || || || | || Sbjct 1078168 TTATCTTGAAT-TTTTGCTTTGACATTTTCAATGGTATCTGATGCCTCAACCTCAAGGGT 1078226 Query 225675 GATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || || || || ||||| || || | || | ||||| || Sbjct 1078227 TATTGTTTTACCAGTCAATGTCTTAACAAAGATCTGCATGTT 1078268 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 |||| || ||||| || || || ||||| || || | ||| ||||| | | || | | Sbjct 1077820 AGTCGGAGTACAAGATGAAGTGTTGATTCCTTCTGAATATTATAATCTGAAAGTGTGCGC 1077879 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 ||||| || || || || ||||||||||| | || || || || || || || |||||| Sbjct 1077880 CCATCCTCAAGTTGTTTACCAGCGAAGATCAATCTCTGCTGATCTGGTGGGATTCCTTCC 1077939 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 || ||||| || ||| ||| ||| || || ||||| || | ||| || || || ||| Sbjct 1077940 TTATCTTGAATTTTTGCCTTTACATTCTCAATAGTGTCGGATGCTTCAACTTCCAAGGTG 1077999 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || || | ||| || | || | |||||| Sbjct 1078000 ATCGTTTTTCCTGTGAGAGTCTTAACAAAGATTTGCAT 1078037 >seq185 Length=3554329 Score = 111 bits (122), Expect = 4e-19 Identities = 117/154 (76%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 7567 ATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGGC 7626 |||||||| | ||||| ||||| || ||||||||| | || || ||| |||| || || Sbjct 484854 ATTATTACCTCTCATGCATTTGTAATCATTTTCTTTGTAGTAATACCGTTTATAATTGGG 484795 Query 7627 GGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAGG 7686 || || ||||| ||||| |||||||| | ||||| ||||||||||| || | || | Sbjct 484794 GGATTTGGAAACTGATTTATTCCTTTAGTAATTGGAGCTCCTGATATAGCAATCTCACGA 484735 Query 7687 CTTAACAATATAAGTTTTTGATTACTACCGCCTT 7720 | || |||||||| || |||||| ||| |||| Sbjct 484734 TTGAATAATATAAGATTGTGATTATTACTCCCTT 484701 >seq691 Length=18988 Score = 100 bits (110), Expect = 7e-16 Identities = 84/103 (82%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| ||| ||||||||||||||||| |||| ||||||||| || || ||||| ||||| | Sbjct 16648 ATACTTCTGGATGACCAAAAAATCAAAATAGATGTTGATATAGAATCGGATCTCCTCCTC 16707 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 ||| ||| ||||||||| |||||| | || | ||| ||||| Sbjct 16708 CTGTTGGGTCAAAAAAGGAAGTATTTATGTTCCGATCTGTTAA 16750 >seq84 Length=5494452 Score = 91.5 bits (100), Expect = 4e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| || ||||| ||||| || |||||||||||||| || ||||| || || ||||| || Sbjct 1635234 GAAGATCTGACCGTCAGTGATGGAGATAACATTTGTGGGAATATAGGCGGACACATCGCC 1635293 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574 || || || || | |||||| || || |||| ||| |||||||| Sbjct 1635294 AGCCTGAGTCTCAATAACAGGCAAAGCGGTTAATGAACCACCACC 1635338 >seq17 Length=647625 Score = 84.2 bits (92), Expect = 5e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 370679 TGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGATGGATCA 370738 |||||||||||||| |||||||||| ||||| || || | ||| | ||| |||||| Sbjct 222964 TGACCAAAAAATCAAAATAAATGTTTATAAAAAATTGGGTTTCCTTCTTCTGTGGGATCA 222905 Query 370739 AAAAAGCTAGTATTAAAATTTCTATCAGTTAAAACAGTTGGTTTAT 370784 |||||| |||||| | |||| ||||||||| | ||| ||||| Sbjct 222904 AAAAAGGAAGTATTTATATTTTGATCAGTTAATAATATTGTTTTAT 222859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192467363059532