Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq136 113 4e-20 >seq136 Length=558006 Score = 113 bits (124), Expect = 4e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 4817 AATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTG 4876 ||||||||| || |||| | ||||||||| ||||| | |||||| || |||| || Sbjct 337829 AATATAAGTATCAATTAACAAAGAATACATTTCTGAATGCACATTTTCCATGGCAACTTG 337770 Query 4877 AAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAA 4936 || || |||||||| | || ||||| | ||| ||||| | || |||| ||| || | Sbjct 337769 GAAACCATAAAAGCAACGTGCCTCTGTGATTTGCACTTCCTGACTGAATCGTTCGACAAG 337710 Query 4937 GTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTA 4996 || || || || || || || ||||||||| || ||||| ||||||||||| |||| Sbjct 337709 ATTCTCATTGACAATTCCATCGGAGGCTGCAAAGAATGCCAATACATGAGATATGAAGTG 337650 Query 4997 CT 4998 || Sbjct 337649 CT 337648 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 5037 TTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGAC 5096 |||| | ||| |||||||||||||||||||| || ||||| || || |||||||| | Sbjct 337517 TTAGAAAGATCTACTTCTTCAACAGTCCAAAAAGAAGCTTCGGCCTTCTTGTACATTTGC 337458 Query 5097 CAAATATCAGGATACTGAATCGGAAGTATGACAAATCT 5134 |||||||| || ||||||| |||| || |||||||| Sbjct 337457 CAAATATCGGGCCACTGAATAGGAAATACAACAAATCT 337420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427027854901274