Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq111 172 8e-38 >seq111 Length=5712365 Score = 172 bits (190), Expect = 8e-38 Identities = 187/248 (75%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 77031 TGAATGGAACCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTC 77090 ||||| |||||| || || ||||| |||||| || || || | ||| | | || Sbjct 1384 TGAATAGAACCATTATTTGCAATAATCTCATTCTTCATGTCCTCGTCCCAGAGATCTCTT 1443 Query 77091 TCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTA 77150 || |||||| |||| | | ||||||||| || | ||||||||||||||||| ||||| Sbjct 1444 TCAGTTAAATCTCTTAACAAATGAGGATTCACGACTTGAAATTCTCCAGACAGTACTCGC 1503 Query 77151 CGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCA 77210 | || || || ||||| ||||||||||| ||||| ||||| ||||| ||||| || || Sbjct 1504 CTTGTATAGATGTTACTCGTATATGGTTCAACAGACTCATTATTTCCTAAAATCTGTGCG 1563 Query 77211 GTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATT 77270 |||||||| |||||||||||||| | || ||| |||||| | || ||| || ||| Sbjct 1564 GTAGAAGCTGTTGGCATAGGTGCAATTAACAAAGAATTTCTAACTCCGTGTTTTGCAATT 1623 Query 77271 TTATCTTT 77278 || ||||| Sbjct 1624 TTTTCTTT 1631 Score = 150 bits (166), Expect = 2e-31 Identities = 221/313 (71%), Gaps = 0/313 (0%) Strand=Plus/Plus Query 78068 ATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAG 78127 ||| |||||||||||||| ||||| | ||| || | |||||| | ||||||||| |||| Sbjct 2816 ATTACCTGTATTCTTTTTGAGATCTAAAAATTCAAAAATATCTGCATGCCATGGCTCTAA 2875 Query 78128 ATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTT 78187 ||||| || | |||| |||| |||||| || || ||||| | ||||| || || || Sbjct 2876 GTATATGGCAAATGCTCCTGGTCTTTTATTTCCACCTTGATCAACGTATCTAGCTGTATT 2935 Query 78188 ATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATA 78247 |||||| || || | ||||||||| | || ||||| ||| ||| |||| || Sbjct 2936 ATTATACACCCTAATCATTGGAATTAACCCATTAGACACACCAAGTGTACCAGCTATTGG 2995 Query 78248 ACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATAT 78307 |||| ||||| |||||| | || | | ||| || || || || ||| || Sbjct 2996 TGTTCCTCTTGCTCGAATACAATGAACGTTAAGCCCAATGCCACCAGCTGATTTACTGAT 3055 Query 78308 TAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAG 78367 || || || | ||| ||||| || || || || |||||||| || || |||| | || Sbjct 3056 AAGCGCACACCTTTTTAATGTGTCATAAATGCCATCTATACTATCTTCAGTCATCGTCAG 3115 Query 78368 AAGAAAACAGCTA 78380 |||||| || ||| Sbjct 3116 AAGAAAGCAACTA 3128 Score = 107 bits (118), Expect = 3e-18 Identities = 185/267 (69%), Gaps = 4/267 (1%) Strand=Plus/Plus Query 78378 CTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAAC 78437 |||||||| || || | ||| | |||| || | ||| || |||||||| ||||| Sbjct 3225 CTAGACATCTGCTGCCTCAAAGTACATGCAGAGAAGAGTGTTGGTGATGCATGTGTAAAA 3284 Query 78438 CATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATT 78497 | ||| || | | |||||||||||| |||||| || ||||| ||| || Sbjct 3285 TAACGTTCTGATAAGAAATTGTATGTTTCTATAGCTCTGTCAATGTCTTCACCATGGATA 3344 Query 78498 CCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTC 78557 | || | || | ||| |||||||| |||||||| || || || || ||| || Sbjct 3345 GCAACTGAAACCCTCATTAACATATGTTGAGGTCTCTCGACAACTTTCCCATGTATCTTT 3404 Query 78558 AACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCTCT 78615 | || || | |||| | |||||||||||||||||| ||||| ||||| ||||| | Sbjct 3405 AGTAAATAACTTCTTTCAAGAGTTTTAAAACCAAAATAATTGTAACTGAAA--TCTCTGT 3462 Query 78616 CGTAAATAATAACAGAATTTAGTTTAT 78642 | ||||| || | ||||||| ||||| Sbjct 3463 CATAAATTATTGCCGAATTTAATTTAT 3489 Score = 105 bits (116), Expect = 9e-18 Identities = 100/125 (80%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 78742 CACTAAATAGtttt-tttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGA 78800 ||||||| |||||| |||||||||||||| | |||||| || || |||||||| || | Sbjct 3677 CACTAAA-AGTTTTCTTTGTTTCCTTGTGCAAATTAGAAACTGCAATTCTTGCTGCCAAT 3735 Query 78801 ATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCT 78860 || || ||||||||||||| ||||| ||||||||| |||| || || | | ||||| Sbjct 3736 ATTGCGTAATCAGGATGTTTAGTAGTCATAGTGGCTGCAGTTTCGGCTGCAAGATTATCT 3795 Query 78861 AACTC 78865 ||||| Sbjct 3796 AACTC 3800 Score = 98.7 bits (108), Expect = 1e-15 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 77913 GTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGG 77972 ||||| || |||||||||||| ||||| |||||| || |||||| |||||| || Sbjct 2551 GTATAAAGGGCTTCAAATTCATCACCCCATACATCAGGTAAACCAGGGGATTCATGGGGA 2610 Query 77973 CACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCAT 78032 ||||| || | ||| |||||| |||| ||| | |||||| || || ||||| |||||| Sbjct 2611 CACATTAAAGTCCAAACACCATTTTCCAAAACCCTTTTCATGAAAAGGTCAGGAATCCAT 2670 Query 78033 AGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCT 78074 | |||| || | || | | ||| | |||||| || ||| Sbjct 2671 AAAGCATAGAACAATTCCCTTGCTCTGTTTTCTTCTTTACCT 2712 Score = 91.5 bits (100), Expect = 2e-13 Identities = 240/361 (66%), Gaps = 14/361 (4%) Strand=Plus/Plus Query 77524 TACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAA 77583 |||||||||| || || | ||||| ||| | ||||||||| |||||||| || | Sbjct 2079 TACCAATAGGCCTGTGCCGTAAGTTGGACTTTTCTGTTTCTGGAATTGGATAATAGTTGA 2138 Query 77584 TGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAA 77643 || || | ||||| | ||| || |||| ||| ||| | ||||| | | Sbjct 2139 CATCAATTACTTTATCCAAATTCTTAGTGACTATTTTTGTCACTTTACGGAGTTTTTGGA 2198 Query 77644 AATCAAATCTTCCATCTA-------TAACAAACATGTTCAAAGCTATAGATGCTAGATTA 77696 |||| || || | || | || ||||| || | || || || |||| ||| Sbjct 2199 AATCGAAGGTTTTAG-TAGCGGAATTCACGAACATATTGACGGCAATCGAAGCTAAATTG 2257 Query 77697 CAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACAT 77756 || || || || || | | ||| |||||||| ||||| ||||| | |||||||||| Sbjct 2258 CATACAGCGACTTCGTCTGGACTGGAATATTGTACGATCTCTGTACACAAATTACTACAT 2317 Query 77757 TTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCA-TGAGTCCTTATAAAGAAT 77815 || || || || | |||||| || || || ||||| ||| || ||||| || || Sbjct 2318 TTAATTGTTCCTATATTTTGGTGATTTGATTTACGGTTGCAGTGA-TCTTTATACAGCAT 2376 Query 77816 AAACGGAGTCCCGGTTTCAATCTGTG--ATTCGATAATAGATTTCCAGACGACTCTAGCT 77873 | |||||||| ||||| | |||| ||| | ||||| |||| | | |||||||| Sbjct 2377 GTAAGGAGTCCCTGTTTCCACTTGTGCCATT--AGAATAGCAGTCCATAAGTCTCTAGCT 2434 Query 77874 T 77874 | Sbjct 2435 T 2435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694632520921920