Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq111 172 8e-38 seq136 109 8e-19 >seq111 Length=5712365 Score = 172 bits (190), Expect = 8e-38 Identities = 226/313 (72%), Gaps = 0/313 (0%) Strand=Plus/Plus Query 76663 ATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAG 76722 ||| |||||||||||||| ||||||| || || | |||||| | ||||||||| |||| Sbjct 2816 ATTACCTGTATTCTTTTTGAGATCTAAAAATTCAAAAATATCTGCATGCCATGGCTCTAA 2875 Query 76723 ATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTT 76782 ||||| || | | || |||| |||||| || || ||||| | ||||| || || || Sbjct 2876 GTATATGGCAAATGCTCCTGGTCTTTTATTTCCACCTTGATCAACGTATCTAGCTGTATT 2935 Query 76783 ATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATA 76842 |||||| || || | ||||||||| | || ||||| |||| ||| |||| || Sbjct 2936 ATTATACACCCTAATCATTGGAATTAACCCATTAGACACACCAAGTGTACCAGCTATTGG 2995 Query 76843 ACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGAT 76902 |||| | ||| |||||| | || || || || || || || |||| ||| Sbjct 2996 TGTTCCTCTTGCTCGAATACAATGAACGTTAAGCCCAATGCCACCAGCTGATTTACTGAT 3055 Query 76903 TAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 76962 || ||||| | ||| ||||||||||| ||||| ||||||||||| || |||| | || Sbjct 3056 AAGCGCACACCTTTTTAATGTGTCATAAATGCCATCTATACTATCTTCAGTCATCGTCAG 3115 Query 76963 AAGAAAACAGCTA 76975 |||||| || ||| Sbjct 3116 AAGAAAGCAACTA 3128 Score = 161 bits (178), Expect = 1e-34 Identities = 210/288 (73%), Gaps = 2/288 (1%) Strand=Plus/Plus Query 75647 ATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGA 75706 ||||| |||||| || || || | ||| | | ||| || |||||| |||| | | | Sbjct 1405 ATAATCTCATTCTTCATGTCCTCGTCCCAGAGATCTCTTTCAGTTAAATCTCTTAACAAA 1464 Query 75707 TGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTA 75766 |||||||| || | ||||||||||||||||| ||||| | || || || ||||| ||| Sbjct 1465 TGAGGATTCACGACTTGAAATTCTCCAGACAGTACTCGCCTTGTATAGATGTTACTCGTA 1524 Query 75767 TATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGT 75826 |||||||| ||||| ||||| ||||| ||||| || || || ||||| || ||||||||| Sbjct 1525 TATGGTTCAACAGACTCATTATTTCCTAAAATCTGTGCGGTAGAAGCTGTTGGCATAGGT 1584 Query 75827 GCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATA-TTTCCA 75885 || | || ||| |||||| | || ||| || ||||| ||||| | ||| |||| Sbjct 1585 GCAATTAACAAAGAATTTCTAACTCCGTGTTTTGCAATTTTTTCTTTCA-ATACACTCCA 1643 Query 75886 ATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAAT 75933 ||||| | | | ||| ||| | ||| | ||| ||||| || || Sbjct 1644 GTCCCACAATTTAGTTGGGGTAACGTTCCACATATCATATTGAAGGAT 1691 Score = 105 bits (116), Expect = 1e-17 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 76506 GTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCG 76565 ||||||| | |||||||||||| ||||| |||||| |||||||| |||||| | Sbjct 2549 GTGTATAAAGGGCTTCAAATTCATCACCCCATACATCAGGTAAACCAGGGGATTCATGGG 2608 Query 76566 GACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCC 76625 ||||||| || | ||| |||||| |||| ||||| |||||| || || ||||| |||| Sbjct 2609 GACACATTAAAGTCCAAACACCATTTTCCAAAACCCTTTTCATGAAAAGGTCAGGAATCC 2668 Query 76626 ATAGAGCA 76633 ||| |||| Sbjct 2669 ATAAAGCA 2676 Score = 95.1 bits (104), Expect = 2e-14 Identities = 181/265 (68%), Gaps = 4/265 (2%) Strand=Plus/Plus Query 76973 CTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAAC 77032 |||||||| || || | ||| | |||| || | ||| || |||||||| || || Sbjct 3225 CTAGACATCTGCTGCCTCAAAGTACATGCAGAGAAGAGTGTTGGTGATGCATGTGTAAAA 3284 Query 77033 CATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATT 77092 | ||| || | | |||||||||||| ||| || || || || ||| || Sbjct 3285 TAACGTTCTGATAAGAAATTGTATGTTTCTATAGCTCTGTCAATGTCTTCACCATGGATA 3344 Query 77093 CCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTC 77152 | || | || | ||| |||||||| ||||||| || ||| || || ||| || Sbjct 3345 GCAACTGAAACCCTCATTAACATATGTTGAGGTCTCTCGACAACTTTCCCATGTATCTTT 3404 Query 77153 AACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCTTT 77210 | || || | |||| | |||||||||||||||||| ||||| ||||| ||||| | Sbjct 3405 AGTAAATAACTTCTTTCAAGAGTTTTAAAACCAAAATAATTGTAACTGAAA--TCTCTGT 3462 Query 77211 CGTAAATAATAACCGAATTTAGTTT 77235 | ||||| || ||||||||| ||| Sbjct 3463 CATAAATTATTGCCGAATTTAATTT 3487 Score = 84.2 bits (92), Expect = 3e-11 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 77339 CTAAATAGtttt-tttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAAT 77397 ||||| |||||| |||||||||||||| | ||| || || || ||||| || || | || Sbjct 3679 CTAAA-AGTTTTCTTTGTTTCCTTGTGCAAATTAGAAACTGCAATTCTTGCTGCCAATAT 3737 Query 77398 TGCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAA 77457 ||| || |||||||||| ||||| |||||||| |||| || || | | ||||||| Sbjct 3738 TGCGTAATCAGGATGTTTAGTAGTCATAGTGGCTGCAGTTTCGGCTGCAAGATTATCTAA 3797 Query 77458 TTC 77460 || Sbjct 3798 CTC 3800 >seq136 Length=558006 Score = 109 bits (120), Expect = 8e-19 Identities = 127/169 (75%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 46896 AACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTG 46955 || ||| ||||| ||||| | | ||||||||||||||| | ||||| || || | || Sbjct 337829 AATATAAGTATCAATTAACAAAGAATACATTTCTGAATGCACATTTTCCATGGCAACTTG 337770 Query 46956 AAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAA 47015 || || ||||| || | ||| || || || || || || || |||||||| ||||| Sbjct 337769 GAAACCATAAAAGCAACGTGCCTCTGTGATTTGCACTTCCTGACTGAATCGTTC-GACAA 337711 Query 47016 -ATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATG 47063 ||||||||| || |||||||| || ||||| |||||||||||||| Sbjct 337710 GATTCTCATTGACAATTCCATCGGAGGCTGCAAAGAATGCCAATACATG 337662 Score = 87.8 bits (96), Expect = 3e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518 |||| || ||||| |||||||| || ||| | || ||||||||| ||||| | | Sbjct 338511 AGTCGGTCCGCAACAAATTCTATGTATTGACACATAAGTTTACAATTCATGCCTATCATT 338452 Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATC 46578 | ||| || | || || || | ||| |||||||| || ||||||||| || || Sbjct 338451 TCGACAGGCAACGCGTCTGTCAAAAATTCTTGTTCGATTTCAACAGCATCCTTAATGATT 338392 Query 46579 GATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAAA 46638 || || ||| ||| | |||| || || | ||| ||||||||||||| ||||| Sbjct 338391 GACGTGACTCGTTCGCAAGATGGTTTCTGTATTATGTGTCTAAACATTAAACACGCAAAG 338332 Query 46639 TCACAATG 46646 |||||||| Sbjct 338331 TCACAATG 338324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712897167000960