Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq13 113 4e-20 seq28 82.4 7e-11 >seq13 Length=4112475 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| || |||||| ||||||||| ||||| ||||| ||| Sbjct 3685706 CCTCCTCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCTGAG 3685647 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| | | |||| || || |||||||| || || |||| ||||| ||||| | ||| Sbjct 3685646 AGGGTTCTCCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 3685587 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | || || || ||| | || |||| ||| | | ||||| | || || Sbjct 3685586 ATTCCTTCTTTATCT-TGAATCTTCGCTTTCACGTTCTCTATGGTGTCTGAAGCTTCTAC 3685528 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||| || || ||||| || ||||| || ||||| ||||||||||| || Sbjct 3685527 CTCCAGGGTGATGGTTTTCCCAGTCAGTGTTTTTACAAAAATCTGCATATT 3685477 >seq28 Length=1782156 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 || |||||||||||||| || || || |||||| | || || || ||||| || || || Sbjct 1076479 TCTTTCTGAATGTTATAATCAGAAAGTGTGCGCCCATCTTCAAGTTGCTTTCCAGCAAAG 1076538 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAAC-GA 41790 |||| | ||| || || | |||| | || |||||| ||| ||||||||| || Sbjct 1076539 ATCAATCTCTGCTGATCTGGCGGAATTCCTTCTTTGTCC-TGAATTTTTGCTTTTACATT 1076597 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | | |||||| | || || |||| || || ||||| || || || ||||| || Sbjct 1076598 CTCAATAGTGTCCGATGCTTCAACTTCCAAAGTAATGGTTTTTCCTGTAAGAGTCTTGAC 1076657 Query 41851 GAAAATCTGCAT 41862 ||| || ||||| Sbjct 1076658 GAAGATTTGCAT 1076669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462279856173600