Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1813 114 1e-20 seq3301 86.0 6e-12 >seq1813 Length=735787 Score = 114 bits (126), Expect = 1e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || || || | |||||| || ||||||||||| ||||| | |||||||||||| ||||| Sbjct 439186 ATGTAGGTGTTGATGAGCAGACTGTACATTTCTGAGTGGACGTTCTCCATGGCGATCTGG 439127 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGA 17353 || || || ||||| || ||||||| | || || ||| | ||| | ||| | || Sbjct 439126 AAGCCATAGAAGCAGCGAGCTTCCGGCACCTGCACCTCCTGGCTGAACCTCTCCACCAGG 439067 Query 17354 TTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATAT 17413 || || || ||||||||||| ||| ||||| |||||||| | || ||||||| | Sbjct 439066 TTCTCATTGACGATGCCGTCAGACGCAGCGAAGAACGCCAACACGTGGGAGATGAAATGT 439007 Query 17414 TTTTCGTC 17421 || || || Sbjct 439006 TTCTCCTC 438999 >seq3301 Length=512230 Score = 86.0 bits (94), Expect = 6e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 119949 TCCATTCCAGTAtttttttAGCCCAGTACATACGTAAGTATCCATGCATTTTACCTTCAC 120008 ||||||| || ||||| || ||||||||||| |||||| ||||||||||||| ||||| Sbjct 484081 TCCATTCGAGAATTTTCTTTGCCCAGTACATGCGTAAGAATCCATGCATTTTCCCTTCCT 484140 Query 120009 GAACCATTTGAAGTTGTGCGGCGTTCCATAAGGGATCGTGTGTACGGGCG 120058 |||| |||| ||| || | |||||| || ||| || || ||||| Sbjct 484141 TCACCAGCTGAATTTGAGCAGAGTTCCACAAATCATCATGGGTGTGGGCG 484190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517487143224480