Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1514 201 1e-46 seq324 96.9 4e-15 >seq1514 Length=8380 Score = 201 bits (222), Expect = 1e-46 Identities = 615/943 (65%), Gaps = 16/943 (2%) Strand=Plus/Minus Query 53729 GCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATG 53788 ||||| || | || | | | ||||| ||||| ||||| ||||| || | || ||| Sbjct 4069 GCTACTTCGTCAGGAGCAGTATATTCCATTATTTCAGTACAAAGGTTTGAGCTTTTTATG 4010 Query 53789 GTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGC 53848 || || | |||| ||| ||||| || ||| ||||| ||| | || ||| | || Sbjct 4009 GTGCCAAGGTTTTTTTGGTTACTTTTCGAGTTGGCTGCATCTTTAAATAGCATGTAGGGT 3950 Query 53849 GTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATA 53908 || |||||||| || ||| ||| | || | ||| | | | | || |||| | Sbjct 3949 GTGCCAGTTTCCATTTGGCTTTCCAATATTTCAAACCATAAGTCTTGGGCTTTTACCGT- 3891 Query 53909 GATTT--GTATCTCTT--TTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCC 53964 ||| ||| || || |||||||||||| |||| || | |||||| | || || Sbjct 3890 --TTTACGTA-CTTTTCCTTCTCTTTCGTAACGTGTGTAAAGCTCTTCAAATGCCTCGCC 3834 Query 53965 CCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATC 54024 | || | |||| || || ||||| | || ||||| | |||||| | ||| ||| Sbjct 3833 ATAGCAATCGGCCAAGCCTGGGCATTCGTTGGGGCACATTAGCGACCAAACGTCGTTATC 3774 Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 | ||| || |||||||| | |||||| ||||| | || ||| ||||| | | | Sbjct 3773 TTCCACCCGCTTCATAAATAAATCAGGTATCCACATGGCGTAAAAAAGATCACGAGCACG 3714 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 ||| || || || || || || | | | | | | | || ||| | |||||| Sbjct 3713 CATTTCTTCTTTACCGTGGTTTTTCTTCAATTGCAAAAGCTCAAAAACATCGGCATGCCA 3654 Query 54145 CGGTTCCAAGTATATGGTCA-TAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATC 54203 || ||||| ||||||| | | | || || | ||| ||||||||||||| || | Sbjct 3653 AGGCTCCAAATATATGGCAAATGAGCCCTTGC-GCTTGCCACCTCCCTGATCTACATAGC 3595 Query 54204 TAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCC 54263 |||||| | ||| | || | ||||||||| || || || || || | ||||| || | Sbjct 3594 GAGCGGTATCATTGAATACCCGCAACATTGGTATTATGCCGTTTGAAGTGCCATTTGTAC 3535 Query 54264 CGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCA 54323 | ||||| ||| |||| | | |||| || ||| || || || || ||| Sbjct 3534 CTTTTATATACGAACCAGTGGCCCTTACATTATGTATGCTTAGGCCAATACCACCCGCCG 3475 Query 54324 TTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCA 54383 || || ||| || ||| | ||||| ||||| || || || ||||| || || Sbjct 3474 ATTGTGATATTTTGGCACATTGCTTTAATGTATCGTAAATACCATCTATTGAGTCGTCTT 3415 Query 54384 TCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT---AGTTCCCGCATTAAATA 54440 ||||| | || ||| ||| ||| | | || | | || || ||||| |||| Sbjct 3414 TCATGGT---TAATAAAAAGCATGACGATAGCTGTGGCTTTGGTGTACCTGCATTGAATA 3358 Query 54441 AGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTG 54500 | || |||| || || ||||||||| || ||||||| ||| || || || || || | Sbjct 3357 ATGTGGGAGTGGCATGGGTAAACCATCGCTCTGAAAGTAAATTATAGGTTTCAATGGCCG 3298 Query 54501 AGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTT 54560 |||| ||||| |||||| ||||| || |||||||| | ||| ||||| || | || Sbjct 3297 AGTCGATATCTATACCATGAATACCTACAGCTACACGCATGAGCATATGCTGTGGGCGTT 3238 Query 54561 CAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAAT 54620 | | || || | ||||| | | || |||||||| | |||||||| ||||||| Sbjct 3237 CTGCTATATTTCCATCAATTTTTAAAAGATATGATTTTTCGAGTGTTTTAAAGCCAAAAT 3178 Query 54621 AGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAG 54663 | | || ||| |||| || || || ||| |||| ||| Sbjct 3177 AATCATAACCAAAATCTCTATCATATATTATAGTAGAGTCGAG 3135 >seq324 Length=1196970 Score = 96.9 bits (106), Expect = 4e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 71792 TTTCCAGACATTGTTGAATTCTGTGAGCGTATGGCAAACGAAGGAAAAATAGTTATAGTA 71851 |||||||||| ||| || || |||||| ||||| || | || ||| | ||| |||| Sbjct 298456 TTTCCAGACACTGTAGAGTTTTGTGAGTTGATGGCTGACCAGGGTAAAGTGGTTGTAGTG 298397 Query 71852 GCCGCACTCGATGGGACATTTCAACGTAAACCGTTTAATAATATCTTGGATCTTATTCCA 71911 || ||| | ||||| || | ||||| || ||| |||||| | | || |||| Sbjct 298396 GCTGCATTGGATGGTACCTACCAACGCCAAGGCTTTGGAAATATCCTTCAGCTGGTTCCT 298337 Query 71912 TTATCTGAAATGGTGGTAAAACTAACTGCAGTGTGTATGAAATGCTTT 71959 || | |||| |||| ||||| |||||||||||||||||||||||| Sbjct 298336 TTGGCAGAAAGTGTGGAGAAACTTACTGCAGTGTGTATGAAATGCTTT 298289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593654539145280