Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1813 161 1e-34 seq3957 96.9 4e-15 >seq1813 Length=735787 Score = 161 bits (178), Expect = 1e-34 Identities = 146/184 (79%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 116712 ACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCG 116771 |||||||| |||||| | | ||| ||||||||| |||||| |||| || |||| Sbjct 438979 ACTGGGAGACCTTGAAGCAAGAGGAGAAACATTTCATCTCCCACGTGTTGGCGTTCTTCG 439038 Query 116772 CCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGG 116831 | || |||||||||||||| ||||| ||||| ||| | ||| ||||||||||||| Sbjct 439039 CTGCGTCTGACGGCATCGTCAATGAGAACCTGGTGGAGAGGTTCAGCCAGGAGGTGCAGG 439098 Query 116832 TGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAA 116891 || | || || || |||||||| ||||| |||||||||||||||||||| ||||| |||| Sbjct 439099 TGCCGGAAGCTCGCTGCTTCTATGGCTTCCAGATCGCCATGGAGAACGTCCACTCAGAAA 439158 Query 116892 TGTA 116895 |||| Sbjct 439159 TGTA 439162 >seq3957 Length=668572 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||||||||| | || || || ||||| ||| | || || || | Sbjct 478684 AAAATGCAGATCTTCGTAAAAACATTAACAGGGAAGACCATAACCTTAGAGGTTGAGCCT 478743 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | |||| || || | |||||||||||||| || | || Sbjct 478744 TCAGACACAATCGATAATGTGAAGGCCAAGATCCAAGACAAAGAGGGCATTCCACCTGAT 478803 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| ||||| |||| ||| ||||||||||| || || | ||||| | |||||| Sbjct 478804 CAGCAGCGACTGATCTTCGCTGGCAAACAGCTTGAGGATGGTCGCACATTGTCAGACTAC 478863 Query 40867 AACATCCAGAA 40877 ||||| ||||| Sbjct 478864 AACATTCAGAA 478874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515161005991360