Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2057 125 6e-24 seq1813 104 2e-17 >seq2057 Length=842785 Score = 125 bits (138), Expect = 6e-24 Identities = 177/246 (72%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 23006 ACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTG 23065 ||| || |||||| |||| || ||||| || || || |||||||| || || || Sbjct 607742 ACATACATGTTGAGAGCGAGGGAAGCAAGGTTACACACTGCCACCTCATCAGGAGAGCTG 607801 Query 23066 TACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTG 23125 ||||| ||||| || || || |||||||| ||||| || ||||| | || |||||| Sbjct 607802 TACTCCACAATCTCAGTGCAGAGATTGCTGCACTTGATGGTGCCAAGGTTCTGTTGGTTG 607861 Query 23126 CTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGAC 23185 || || ||||| | ||| |||||||||||||| || ||||| || || ||||| ||| Sbjct 607862 GACTTGCGGTTGCATGCATCTTTGTAGAGCATGTAGGGAGTGCCTGTTTCCACCTGGGAC 607921 Query 23186 TCGATGATCGCTCGCCACA-TAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTC 23244 | ||||| || ||||| | || || || | || | ||| | |||||||||| || Sbjct 607922 TGAATGATGGCGTACCACAGTTGT-TGGGCCTTCACCTGACGCCTGAACCTGCCTTCCTC 607980 Query 23245 CTCGTA 23250 || || Sbjct 607981 TTCATA 607986 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 23494 CTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCAC 23553 |||||| || ||||| || || ||||| ||||||||||||||||| | |||||| || || Sbjct 609596 CTTATTTCCTCCCTGGTCCACATAACGAGCCGTGTTGTTGTACACACGTAGCATAGGTAC 609655 Query 23554 GAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTG 23613 | || ||| | ||| |||||| | || || ||||| | | ||| Sbjct 609656 CAATCCATTGCTGACACCGTTAGTGCCCGCAATGTAAGATCCAGCAGCTCGGATGCAGTG 609715 Query 23614 AACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTC 23673 |||| || ||| ||||| || | || || || || | || || ||||| || || || Sbjct 609716 TACGTTGACACCAATGCCACCAGCAGACTTGGAGATTAGTGCACACTGTTTGAGGGTATC 609775 Query 23674 GTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACA 23718 ||||| ||||| |||||||| || || | | | || |||||| Sbjct 609776 ATAGATTCCCTCAATGCTGTCATCCTTCATTGTCAGCAGGAAACA 609820 >seq1813 Length=735787 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 57669 GAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAAC 57728 |||| | |||| || |||||||||||||| ||||| || || || || || || || Sbjct 439002 GAGAAACATTTCATCTCCCACGTGTTGGCGTTCTTCGCTGCGTCTGACGGCATCGTCAAT 439061 Query 57729 GAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTAC 57788 ||||| |||| || || || || || ||||| ||| |||| || | ||||| || Sbjct 439062 GAGAACCTGGTGGAGAGGTTCAGCCAGGAGGTGCAGGTGCCGGAAGCTCGCTGCTTCTAT 439121 Query 57789 GGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACG 57848 || || || | ||||| || ||||| || ||||||||||| || |||||| | || Sbjct 439122 GGCTTCCAGATCGCCATGGAGAACGTCCACTCAGAAATGTACAGTCTGCTCATCAACACC 439181 Query 57849 TACGTGAAGGAC 57860 ||| | |||||| Sbjct 439182 TACATCAAGGAC 439193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445716050685120