Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_003309.1 Length=53373 Score E Sequences producing significant alignments: (Bits) Value seq5718 379 7e-101 seq7071 315 2e-81 seq581 250 8e-62 >seq5718 Length=3737 Score = 379 bits (420), Expect = 7e-101 Identities = 394/515 (77%), Gaps = 1/515 (0%) Strand=Plus/Minus Query 33403 CCTCAGCTTCAGCGGGCGGGATATAGCCGAGCGGTTCCATCAGCCGATGATGGTTGTACC 33462 |||| ||||| || || ||||| | || | ||||||| || || || | ||| ||| Sbjct 3305 CCTCTGCTTCGGCAGGTGGGATGTGCCCAATGGGTTCCAGAAGTCGCTGGTAGTTAAACC 3246 Query 33463 AGGCGACCCATTCCAGCGTTGCCAGTTCGACGGATTCCCTCGTTTTCCAAGGGGCGCGCC 33522 ||| |||||||||||| || || | ||| | || || || ||| | || | |||| Sbjct 3245 AGGTGACCCATTCCAGGGTGGCAACTTCCAGTGACTCAACGGTCTTCTAGGGACCTCGCC 3186 Query 33523 GATGAATCAGTTCCGTCTTGTACAGGCCGTTGATCGTTTCGGCCAGCGCATTGTCGTAGC 33582 |||| || ||||| | |||||||| |||||||| ||||| ||||| || || ||||||| Sbjct 3185 GATGGATAAGTTCGGCCTTGTACAACCCGTTGATGGTTTCAGCCAGTGCGTTATCGTAGC 3126 Query 33583 TGTCGCCCCGGCTGCCGACTGAGGGCTCGATGCCGGCCTCAGCCAGCCGTTCGCTGTAGC 33642 ||||||| |||||| ||||| ||||| ||||| || || ||||||||||| |||||| Sbjct 3125 TGTCGCCTTTGCTGCCAACTGATGGCTCAATGCCAGCTTCTGCCAGCCGTTCCGTGTAGC 3066 Query 33643 GAATGCTGACGTATTGAGACCCCCTGTCGGAATGATGAATCAAAGTCCCGTCCTCGCCCG 33702 |||| ||||| || ||||| | ||| ||||||||||||| | |||| | | Sbjct 3065 GAATAGAAACGTACTGCGACCCACGGTCCGAATGATGAATCAGGCTGTTGTCCCGTTCGG 3006 Query 33703 GTTGGCGGGCGTACAGCGCTTGTTCAAGTGCATCCAGAACAAAGTCCGTGGTCATCGACG 33762 |||| || || || ||||| ||||| || ||||| ||||||||||| || ||||||| Sbjct 3005 GTTGACGTGCATAGAGCGCCTGTTCCAGCGCATCAAGAACAAAGTCTGTTCTCATCGAAC 2946 Query 33763 AGCTGACCCGCCAGCCAACAATACGGCGGGCGAACACGTCGATCACGAATGCCACGTACA 33822 |||||||||||| || || || || ||||| || || || |||||||| ||||| || | Sbjct 2945 GGCTGACCCGCCAACCGACGATCCGACGGGCAAAGACATCAATCACGAAGGCCACATAGA 2886 Query 33823 GCCAGCCTTGCCATGTCGAGACATACGTAAAATCCGACACCCAGAGCTGATTC-GGTCGG 33881 ||||| ||| || || ||||||||||||||||||||||||||||||||| || || Sbjct 2885 CAAAGCCTGCCCACGTGGACACATACGTAAAATCCGACACCCAGAGCTGATTCTGGCCGA 2826 Query 33882 TCAGCCTTGAACTGCCGGTTGACTCGGTCCAGCGG 33916 || |||||||| ||||||||||| || ||| |||| Sbjct 2825 TCCGCCTTGAATTGCCGGTTGACCCGATCCTGCGG 2791 >seq7071 Length=1310 Score = 315 bits (348), Expect = 2e-81 Identities = 680/999 (68%), Gaps = 30/999 (3%) Strand=Plus/Minus Query 33403 CCTCAGCTTCAGCGGGCGGGATATAGCCGAGCGGTTCCATCAGCCGATGATGGTTGTACC 33462 |||| |||||||| || ||||| | |||| ||||| | ||| || | | |||| ||| Sbjct 1293 CCTCTGCTTCAGCCGGTGGGATGTTCCCGATAGGTTCAAGCAGGCGGCGGTTGTTGAACC 1234 Query 33463 AGGCGACCCATTCCAGCGTTGCCAGTTCGACGGATTCCCTCGTTTTCCAAGGGGCGCGCC 33522 | ||||||||| || ||| |||||||||| ||| | |||||||| | |||| Sbjct 1233 AATCGACCCATTTGAGGGTTTCCAGTTCGACCTCGTCCATGGTTTTCCATGAACTACGCC 1174 Query 33523 GATGAATCAGTTCCGTCTTGTACAGGCCGTTGATCGTTTCGGCCAGCGCATTGTCGTAGC 33582 | | || | || || ||||| ||||||||||||||||| |||| || ||||| ||| Sbjct 1173 GCCGGATGACCTCGGTTTTGTAGAGGCCGTTGATCGTTTCAGCCAAGGCGTTGTCATAGG 1114 Query 33583 TGTCGCCCCGGCTGCCGACTGAGGGCTCGATGCCGGCCTCAGCCAGCCGTTCGCTGTAGC 33642 |||||| |||||| || ||||| |||||||| |||| |||| || ||| |||||| Sbjct 1113 CGTCGCCGACGCTGCCAACGGAGGGTTCGATGCCTGCCTTTGCCAATCGCTCGGTGTAGC 1054 Query 33643 GAATGCTGACGTATTGAGACCCCCTGTCGGAATGATGAATCAAAGTCCCGTCCTCGCCCG 33702 ||||| |||||||| || | |||| |||||||| ||| |||| ||| | | Sbjct 1053 GAATGGACACGTATTGCCCGCCGCGGTCGCTGTGATGAAT--AAG-CCCG-CCTTGATAG 998 Query 33703 GTT----GGCGGGCGTACAGCGCTTGTTCAAGTGCATCCAGAACAAAGTCCGTGGTCATC 33758 ||| ||||||| || |||||||| ||||||||||| || || ||||| |||| | Sbjct 997 GTTGGACGGCGGGCATAAAGCGCTTGCTCAAGTGCATCGAGGACGAAGTC---GGTCTTG 941 Query 33759 GACGAGC-TGA--CCCGCCAGCCAACAATACGGCGGGCGAACACGTCGATCACGAATGCC 33815 | || | || || ||| || ||||| ||| |||||| |||||||||||| || Sbjct 940 GCAGACCGCGACGCCTTCCATCCGACAATGCGGTTGGCGAAGGTGTCGATCACGAAGGCG 881 Query 33816 ACGTACAGCCAGCCTTGCCATGTCGAGACATACGTAAAATCCGACACCCAGAGCTGATTC 33875 || || | |||| |||||||| |||||||| || || || ||||| ||| ||| Sbjct 880 ACATAAACGAAGCCCTGCCATGTTGAGACATAGGTGAAGTCGCTTACCCACAGCATATTT 821 Query 33876 GGTCGGT-CAGCCTTGAACTGCCGGTTGACTCGGTCCAGCGGGCGCGGCGCGGTCACATC 33934 || || | || ||||| ||||| || || | |||| ||| | | | || Sbjct 820 GG-CGCTGGTGCTCGGAACTTACGGTTCACCTTATCGCGTGGGCATGGCACTGACGTGTC 762 Query 33935 GGTAATCGTCGTGCGAACACGCTTACCGCGAACTGCGCCACGCA-AGCCCTGCAGCTTCA 33993 || ||||| || | ||| || ||||| | || |||| | || ||| |||| Sbjct 761 GGGGATCGTTGTTTTCATGGCCTTTCCTCGAACGACTCCCCGCAGACCCATGC-CTTTCA 703 Query 33994 TCAACCGTCCGACCGTGCAGCGTGCCACCGTAATGCCTTCCCGGTTCATCTGCTTCCAGA 34053 | | ||| | || |||||||| ||||| | ||||| ||| || |||| |||| Sbjct 702 TGAGACGTGCCACGGTGCAGCGCGCCACAGCTTCACCTTCACGGCACAGCTGCCGCCAGG 643 Query 34054 CCTTCGGCACGCCGTAGACCTGCATGTTGGCCTGCCAGACACGCTTGATCTCCGGTTGCA 34113 | || | || ||||| |||| | |||| | |||||| || ||| | ||| ||| Sbjct 642 CTTTGCGGACACCGTAAACCTCCCAGTTGTTATCCCAGACCTTCTGGATTTTGGGTCGCA 583 Query 34114 AAAGCTCATCGCGTTTCGCGCGGGCGCAGCGTTTCGACGGAT---CGCGAAGTTGTGCTG 34170 ||| | |||| | | | ||| || || || ||||||| |||| | | | Sbjct 582 AAACCGCATCCCTCTGCTGGCGTGCAGAGGCCTTGGACGGATCGGCGCGCA-CAGCGAGA 524 Query 34171 CATGGCGTCGGTAGCCCGACGGGGCAATCCGCAAGACCTTGCAGATCGGCTCGACCCCGA 34230 || ||||| ||| || ||||||||| ||| || ||||||| | ||||||||| Sbjct 523 CA-GGCGT-AATAGGTTGATGGGGCAATCGGCAGCACTCTGCAGATAGACTCGACCCCAT 466 Query 34231 AGGTGTCGCGATGCTGATCAATGAAGGCCTTCAGGACTTGAAACGGCGGTCGAGCTCCGC 34290 | ||||||| | ||||||||| | ||| | |||||| |||||||||| ||||| Sbjct 465 GAGCCACGCGATGATCGTCAATGAAGCCGATCATGGCTTGAACGGGCGGTCGAGTTCCGC 406 Query 34291 CTGAGCGAAAAACGCGCTCGCCAGTTTG---AGAATCTCGTTGGTCCGGCGCAGTTCCTT 34347 ||| || ||| | || |||| ||| || ||||| || | | | || || | Sbjct 405 CTGCGCAAAATAAGCCGACGCC---TTGCGCAGGATCTCATTCGCCTGTCGGAGCTGACG 349 Query 34348 GACCTCGCGCTCCAAGGCTTTGATGCGTTCACGCTCGGC 34386 || || |||||||| ||||||| || || || || || Sbjct 348 CACTTCCCGCTCCAACTCTTTGATCCGATCGCGTTCAGC 310 >seq581 Length=20508 Score = 250 bits (276), Expect = 8e-62 Identities = 879/1333 (66%), Gaps = 81/1333 (6%) Strand=Plus/Minus Query 33322 GCACCGGGAATCGTGGAGGCTGGTTGGTTTAAGTTAATGCGGACACGTCAGCGGCATTTC 33381 || |||||| || |||||| | || |||| ||| | |||| || || | || ||| Sbjct 4403 GCCCCGGGATTCCCGGAGGCAGTTTTGTTTGAGTCA-TGCGACCATATC-GAGG---TTC 4349 Query 33382 TGAGTTGTCTG--TAGTAGTTTGCCTCAGCTTCAGCGGGCGGGATATAGCCGAGCGGTTC 33439 | | || ||| |||||||| || || || || ||||||||||| | |||| ||| | Sbjct 4348 TC-GATGGCTGCATAGTAGTTGGCTTCGGCCTCGGCGGGCGGGATGTGCCCGATGGGTCC 4290 Query 33440 CATCAGCCGATGATGGTTGTACCAGGCGACCCATTCCAGCGTTGCCAGTTCGACGGATTC 33499 | ||| || |||| |||| ||||| | ||||| ||| || |||| ||| || | | Sbjct 4289 GAACAGGCGGTGATTGTTGAACCAGTCTACCCAGCGCAGGGTCGCCATTTCCACCG---C 4233 Query 33500 CCT--CGTTTTCCAAGGGGCGC-GCCGATGAATCAGTTCCGTCTTGTACAGGCCGTTGAT 33556 | ||||| | | | |||| | || || | || | |||||| ||||||||||| Sbjct 4232 CGAAGCGTTTGGCCATGAGCGCTGGCGCCAGATAACCTCGGCCTTGTAGAGGCCGTTGAT 4173 Query 33557 CGTTTCGGCCAGCGCATTGTCGTAGCTGTCGCCCCGGCTGCCGACTGAGGGCTCGATGCC 33616 ||| ||||||| || ||||||||||||||||| ||||||||| || ||| ||| | Sbjct 4172 CGTCTCGGCCAAGGCGTTGTCGTAGCTGTCGCCGACGCTGCCGACCGATGGCACGAGGTT 4113 Query 33617 GGCCTCAGCCAGCCGTTCGCTGTAGCGAATGCTGACGTATTGAGACCCCCTGTCGGAATG 33676 |||||| ||||| || | | ||||| || | |||||| |||| |||| || Sbjct 4112 GGCCTCGGCCAGGCGCTGGGTGTAGTTCATCGCCAGATATTGAACACCCCGGTCGCTGTG 4053 Query 33677 ATGAATCAAAGTCCCGTCCTCGCCC---GGTTGGCGGGCGTACAGCGCTTGTTCAAGTGC 33733 || |||| || |||||| || ||| |||||| | | ||| || || || || Sbjct 4052 GTGGATCA---GGCCATCCTCGGCCCTGGGTCTGCGGGCATGGATCGCCTGCTCCAGGGC 3996 Query 33734 ATCCAGAACAAAGTCCGTGGTCATCGACGAGCTGACCCGCCAGCCAACAATACGGCGGGC 33793 ||| || || ||| ||| || ||| | ||||||| |||||| || || || || || Sbjct 3995 ATCGAGCACGAAGCCCGCCGTGGCCGAGGTGCTGACCTTCCAGCCCACGATCCGCCGAGC 3936 Query 33794 GAACACGTCGATCACGAATGCCACGTACAGCCAGCCTTGCCATGTCGAGACATACGTAAA 33853 || | ||||||||||| || ||||| | | || ||| || ||| || || || Sbjct 3935 AAAGGCATCGATCACGAAGGCAACGTAGACGAACCCGGTCCAGGTATGGACGTAAGTGAA 3876 Query 33854 ATCCGACACCCAGAGCTGATTCGGTCGGTCAGCCTTGAACTGCCGGTTGACTCGGTCCAG 33913 || |||||| ||| ||| || ||| ||||||||| ||||| || ||| || Sbjct 3875 GTCGACCACCCACAGCGCATTGGGCCGGCTGACCTTGAACTCGCGGTTCACCTTGTCGAG 3816 Query 33914 CGGGCGCGGCGCGGTCACATCGGTAATCGTCGTGCGAACACG----CTTACC---GCGAA 33966 ||||| ||| || || || || | ||||| || || ||| || ||||| Sbjct 3815 CGGGCACGGTGCCTTCGGAT---TACTGATCGTGGTCAC-CGTCTTCTTGCCCCGGCGAA 3760 Query 33967 CTGCGCCACGCAAGCCC--TGCAGCTTCATCAACCGTCCGACCGTGCAGCGTGCCACCGT 34024 |||| ||| ||||| || || ||||| ||| | || ||||| | ||||| | Sbjct 3759 ---CGCC-CGCGAGCCCCATGGCGC-GCATCAGTCGTTCCACGGTGCACCTAGCCACTTT 3705 Query 34025 AATGCCTTCCCGGTTCATCTGCTTCCAGACCTTCGGCACGCCGTAGA--CC--TGCATGT 34080 | ||||| ||| |||||| | ||||||||| | | || |||| || || ||| Sbjct 3704 GGTCCCTTCGCGGCGCATCTGGTGCCAGACCTTGCGGGCACCATAGAGGCCAAAGC-TGT 3646 Query 34081 TGGCCTGCCAGACACGCTTGATCTC--CGGTTGCAAAAGCTCATCGCGTTTCGCGCGGGC 34138 | | || ||| ||||||||| | || || | || ||||| || ||||| Sbjct 3645 TCTCGTG---GACGCGCTTGATCGCCTCGCTT--ATCTCGTCGTCGCGCCGGGCACGGGC 3591 Query 34139 --GCAGCGTTTCGACGGATCGCGAAGTTGTGCTGCATGGCGTCGGTAGCCCGACGGGGCA 34196 | || | || |||||| ||| | | || || ||||| || ||||| Sbjct 3590 CGGACGCCTGCCG--GGATCGGCAAGGCGGACAGCGTGTTCATGGTAGGAAGATGGGGCG 3533 Query 34197 ATCCGCAAG-ACCTTGCAGATCGGCTCGACCCCGAAGGTGTCGCGATGCTGATCAATGAA 34255 | |||| || | |||||||||||||| || | || || || || ||||| Sbjct 3532 A-CCGCCAGTTCACGGCAGATCGGCTCGATACCCAGTTCTTCCCGGTGAGCGTCGATGAA 3474 Query 34256 GGCCTTCAGGACTTGAAACGGCGGTCGAGCTCCGCCTGAGCGAAAAACGCGCTCGCCAGT 34315 | | ||| | ||| ||||||||||||||||||| || ||| | || ||| Sbjct 3473 CGACATCACCATTTGCCGTGGCGGTCGAGCTCCGCCTGCGCAAAATATGCTGATGCC--- 3417 Query 34316 TTG---AGAATCTCGTTGGTCCGGCGCAGTTCCTTGACCTCGCGCTCCAAGGCTTTGATG 34372 ||| || |||||||| | |||||| || ||||||||||| ||||||| | |||| Sbjct 3416 TTGCGCAGGATCTCGTTCGCCCGGCGAAGCTCCTTGACCTCACGCTCCAGCACCTTGAGC 3357 Query 34373 CGTTCACGCTCGGCCGTACTCAC-GCCATCGC-GCTCTCCACGGTCGAC--CTCG-TTGC 34427 || ||||| || ||| || ||| ||| || || || ||| | |||| | | Sbjct 3356 CGATCACGTTC------ACTGACAGCCTGCGCTGCCGGCCCCGCTCGTCGGCTCGCCTCC 3303 Query 34428 GCTTAAC-CCAATCCAACAGCGTCTGCGGCGTGCAGCCGATCATCGGCGCAATCGATTCG 34486 | | ||| |||||||| | ||||||||||| | || |||||||| Sbjct 3302 TCGCGGCACCAGCGGCGCAGCGTCTCGGTCGTGCAGCCGACCTTCCCGGCAATCGACGTC 3243 Query 34487 ACGGCCGCCCACATCGACGGGTGCTCGCTACGCTGCTCGCGTACCAGGCGCACTGCGCGC 34546 | || |||||| ||| |||| || | || ||||| |||| ||||| ||||| Sbjct 3242 AGCGCTGCCCACTCCGATGGGTAGTCCCCCCGGTGCTCCTCCACCATCCGCACCGCGCGG 3183 Query 34547 TCTCGGACTTCCGGGGAAAAC----TGCTTGGCTT-CTGTTCATGGCTCCATTCTCTCAG 34601 || || | || || |||||| | |||| || || || ||||||| ||||| ||| Sbjct 3182 TCGCGAAACTCAGGCGAAAACTTGTTCCTTGAATTGCTCATCGTGGCTCC-TTCTCACAG 3124 Query 34602 AGTTGGAGCCTCC 34614 | | ||||||||| Sbjct 3123 A-TAGGAGCCTCC 3112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170653686467720