Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1514 206 3e-48 seq324 82.4 1e-10 >seq1514 Length=8380 Score = 206 bits (228), Expect = 3e-48 Identities = 606/928 (65%), Gaps = 8/928 (1%) Strand=Plus/Minus Query 62967 GCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATA 63026 ||||| || | || | | | ||||| ||||| ||||| ||||| || | || || Sbjct 4069 GCTACTTCGTCAGGAGCAGTATATTCCATTATTTCAGTACAAAGGTTTGAGCTTTTTATG 4010 Query 63027 GTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGA 63086 || || | |||| ||| ||||| || ||| ||||| ||| | || ||| | || Sbjct 4009 GTGCCAAGGTTTTTTTGGTTACTTTTCGAGTTGGCTGCATCTTTAAATAGCATGTAGGGT 3950 Query 63087 GTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA 63146 || |||||||| || || ||| | || | ||| | | || | || |||| | Sbjct 3949 GTGCCAGTTTCCATTTGGCTTTCCAATATTTCAAACCATAAGTCTTGGGCTTTTACCGT- 3891 Query 63147 GATTT--GTA-TCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCC 63203 ||| ||| | | | |||||||||||| | || || | ||| || | || || Sbjct 3890 --TTTACGTACTTTTCCTTCTCTTTCGTAACGTGTGTAAAGCTCTTCAAATGCCTCGCCA 3833 Query 63204 CAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCC 63263 | || | |||| | || ||||| | || ||||| | |||||| | ||| ||| Sbjct 3832 TAGCAATCGGCCAAGCCTGGGCATTCGTTGGGGCACATTAGCGACCAAACGTCGTTATCT 3773 Query 63264 TTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTA 63323 | ||| || |||||||| | |||||| ||||| | || ||| ||||| | | | Sbjct 3772 TCCACCCGCTTCATAAATAAATCAGGTATCCACATGGCGTAAAAAAGATCACGAGCACGC 3713 Query 63324 TGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCAC 63383 ||| || || || || || || | | | | | | | || ||| | |||||| Sbjct 3712 ATTTCTTCTTTACCGTGGTTTTTCTTCAATTGCAAAAGCTCAAAAACATCGGCATGCCAA 3653 Query 63384 GGTTCCAAGTATATGGCCA-TAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCT 63442 || ||||| |||||||| | | | || || | ||| ||||||||||||| || | Sbjct 3652 GGCTCCAAATATATGGCAAATGAGCCCTTGC-GCTTGCCACCTCCCTGATCTACATAGCG 3594 Query 63443 AGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACC 63502 |||||| | ||| | || | ||||||||| || || |||||||| | ||||| ||||| Sbjct 3593 AGCGGTATCATTGAATACCCGCAACATTGGTATTATGCCGTTTGAAGTGCCATTTGTACC 3534 Query 63503 GGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCAT 63562 ||||| ||| |||| | | |||| || ||| || || || || ||| Sbjct 3533 TTTTATATACGAACCAGTGGCCCTTACATTATGTATGCTTAGGCCAATACCACCCGCCGA 3474 Query 63563 TTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGAT 63622 || || ||| || ||| | ||||| || || || || || ||||| || || | Sbjct 3473 TTGTGATATTTTGGCACATTGCTTTAATGTATCGTAAATACCATCTATTGAGTCGTCTTT 3414 Query 63623 CATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGT 63682 |||| | | || ||| || || | || | | || || ||||| ||||| || Sbjct 3413 CATGGTTAATAAAAAGCATGACGATAGCTGTGGCTTTGGTGTACCTGCATTGAATAATGT 3354 Query 63683 AGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTC 63742 |||| || || ||||||||| || ||||||| ||| || || ||||| || ||||| Sbjct 3353 GGGAGTGGCATGGGTAAACCATCGCTCTGAAAGTAAATTATAGGTTTCAATGGCCGAGTC 3294 Query 63743 TATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAAC 63802 ||||| |||||| ||||| || |||||||| | ||| ||||| || | ||| | Sbjct 3293 GATATCTATACCATGAATACCTACAGCTACACGCATGAGCATATGCTGTGGGCGTTCTGC 3234 Query 63803 AATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTT 63862 || || | ||||| || | || |||||||| | |||||||| |||||||| | Sbjct 3233 TATATTTCCATCAATTTTTAAAAGATATGATTTTTCGAGTGTTTTAAAGCCAAAATAATC 3174 Query 63863 GTATGAAAAGTCTCGTTCGTAAATAATA 63890 || ||| |||| || || || ||| Sbjct 3173 ATAACCAAAATCTCTATCATATATTATA 3146 >seq324 Length=1196970 Score = 82.4 bits (90), Expect = 1e-10 Identities = 119/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 81017 TTTCCAGACATTGTTGAATTCTGTGAGCGTATGGCAAACGAAGGAAAAATAGTTATAGTA 81076 |||||||||| ||| || || |||||| ||||| || | || ||| | ||| |||| Sbjct 298456 TTTCCAGACACTGTAGAGTTTTGTGAGTTGATGGCTGACCAGGGTAAAGTGGTTGTAGTG 298397 Query 81077 GCCGCGCTCGATGGGACATTTCAACGTAGACCGTTTAATAATATTTTGAATCTTATTCCA 81136 || || | ||||| || | ||||| | ||| ||||| | | || |||| Sbjct 298396 GCTGCATTGGATGGTACCTACCAACGCCAAGGCTTTGGAAATATCCTTCAGCTGGTTCCT 298337 Query 81137 TTATCTGAAATGGTGGTAAAACTAACTGCAGTGTGTATGAAATGCTTT 81184 || | |||| |||| ||||| |||||||||||||||||||||||| Sbjct 298336 TTGGCAGAAAGTGTGGAGAAACTTACTGCAGTGTGTATGAAATGCTTT 298289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629746462102080