Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1514 199 4e-46 >seq1514 Length=8380 Score = 199 bits (220), Expect = 4e-46 Identities = 451/672 (67%), Gaps = 6/672 (1%) Strand=Plus/Minus Query 37966 AATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCC 38025 || ||||| |||||| || |||||||| ||||| | || | | ||| || || | | Sbjct 3820 AAGCCTGGGCATTCGTTGGGGCACATTAGCGACCAAACGTCGTTATCTTCCACCCGCTTC 3761 Query 38026 ATAAATAAATCAGGTACCCATAATGCAGTAAATAA-ATCTTTGGTTCTATATTCTTCGTT 38084 |||||||||||||||| ||| | || ||||| || ||| | | |||||| || Sbjct 3760 ATAAATAAATCAGGTATCCACATGGC-GTAAAAAAGATCACGAGCACGCATTTCTTCTTT 3702 Query 38085 CCCTACATTCTTTCTTAAGCTTAGAAAA--TCGAATATATCAGCGTGCCATGGTTCTATA 38142 || || |||||| | || |||| || || | ||| || ||||| || || | | Sbjct 3701 ACCGTGGTT-TTTCTTCAA-TTGCAAAAGCTCAAAAACATCGGCATGCCAAGGCTCCAAA 3644 Query 38143 TAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTA 38202 || || | | || || | || |||||||||||| | ||| | | | || | | Sbjct 3643 TATATGGCAAATGAGCCCTTGCGCTTGCCACCTCCCTGATCTACATAGCGAGCGGTATCA 3584 Query 38203 TTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAA 38262 || ||| | ||||| |||| ||| || || || |||| ||| |||| |||||| Sbjct 3583 TTGAATACCCGCAACATTGGTATTATGCCGTTTGAAGTGCCATTTGTACCTTTTATATAC 3524 Query 38263 GTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATT 38322 | ||| | || | || |||| ||| | || || ||||| || || ||||||| Sbjct 3523 GAACCAGTGGCCCTTACATTATGTATGCTTAGGCCAATACCACCCGCCGATTGTGATATT 3464 Query 38323 AAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGT 38382 || ||||| ||||| ||||| | ||||| ||||| ||| || || || | || | Sbjct 3463 TTGGCACATTGCTTTAATGTATCGTAAATACCATCTATTGAGTCGTCTTTCATGGTTAAT 3404 Query 38383 ATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCA 38442 | ||| || || | || ||| ||| || || || || |||||||| |||| ||| Sbjct 3403 AAAAAGCATGACGATAGCTGTGGCTTTGGTGTACCTGCATTGAATAATGTGGGAGTGGCA 3344 Query 38443 TGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCG 38502 || | |||||| || || | ||||||| ||||| || | || ||||| Sbjct 3343 TGGGTAAACCATCGCTCTGAAAGTAAATTATAGGTTTCAATGGCCGAGTCGATATCTATA 3284 Query 38503 CCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTA 38562 || |||||||||| || ||| | ||| |||||||| ||||| | |||| ||| || | Sbjct 3283 CCATGAATACCTACAGCTACACGCATGAGCATATGCTGTGGGCGTTCTGCTATATTTCCA 3224 Query 38563 TTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAA 38622 | ||| | ||||| |||||||| | |||||| | ||||||||| ||| | || Sbjct 3223 TCAATTTTTAAAAGATATGATTTTTCGAGTGTTTTAAAGCCAAAATAATCATAACCAAAA 3164 Query 38623 TCTCTATCGTAT 38634 |||||||| ||| Sbjct 3163 TCTCTATCATAT 3152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468471880123840