Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1514 201 1e-46 seq324 91.5 2e-13 >seq1514 Length=8380 Score = 201 bits (222), Expect = 1e-46 Identities = 615/943 (65%), Gaps = 16/943 (2%) Strand=Plus/Minus Query 65760 GCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATG 65819 ||||| || | || | | | ||||| ||||| ||||| ||||| || | || ||| Sbjct 4069 GCTACTTCGTCAGGAGCAGTATATTCCATTATTTCAGTACAAAGGTTTGAGCTTTTTATG 4010 Query 65820 GTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGA 65879 || || | |||| ||| ||||| || ||| ||||| ||| | || ||| | || Sbjct 4009 GTGCCAAGGTTTTTTTGGTTACTTTTCGAGTTGGCTGCATCTTTAAATAGCATGTAGGGT 3950 Query 65880 GTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA 65939 || |||||||| || || ||| | || | ||| | | || | || |||| | Sbjct 3949 GTGCCAGTTTCCATTTGGCTTTCCAATATTTCAAACCATAAGTCTTGGGCTTTTACCGT- 3891 Query 65940 GATTT--GTATCTCTT--TTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCC 65995 ||| ||| || || |||||||||||| |||| || | ||| || | || || Sbjct 3890 --TTTACGTA-CTTTTCCTTCTCTTTCGTAACGTGTGTAAAGCTCTTCAAATGCCTCGCC 3834 Query 65996 CCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATC 66055 | || | |||| || || ||||| | || ||||| | |||||| | ||| ||| Sbjct 3833 ATAGCAATCGGCCAAGCCTGGGCATTCGTTGGGGCACATTAGCGACCAAACGTCGTTATC 3774 Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 | ||| || |||||||| | |||||| ||||| | || ||| | ||| | | | Sbjct 3773 TTCCACCCGCTTCATAAATAAATCAGGTATCCACATGGCGTAAAAAAGATCACGAGCACG 3714 Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175 ||| || || || || || || | | | | | | | || ||| |||||| Sbjct 3713 CATTTCTTCTTTACCGTGGTTTTTCTTCAATTGCAAAAGCTCAAAAACATCGGCATGCCA 3654 Query 66176 CGGTTCCAAGTATATGGCCA-TAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATC 66234 || ||||| |||||||| | | | || || | ||| ||||||||||||| || | Sbjct 3653 AGGCTCCAAATATATGGCAAATGAGCCCTTGC-GCTTGCCACCTCCCTGATCTACATAGC 3595 Query 66235 TAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCC 66294 |||||| | ||| | || | ||||||||| || || || || || || ||||| || | Sbjct 3594 GAGCGGTATCATTGAATACCCGCAACATTGGTATTATGCCGTTTGAAGTGCCATTTGTAC 3535 Query 66295 CGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCA 66354 | ||||| ||| | || | | |||| || ||| || || || || ||| Sbjct 3534 CTTTTATATACGAACCAGTGGCCCTTACATTATGTATGCTTAGGCCAATACCACCCGCCG 3475 Query 66355 TTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCA 66414 || || ||| || ||| | ||||| ||||| || || || ||||| || || Sbjct 3474 ATTGTGATATTTTGGCACATTGCTTTAATGTATCGTAAATACCATCTATTGAGTCGTCTT 3415 Query 66415 TCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT---AGTTCCCGCATTAAATA 66471 ||||| | || ||| ||| ||| | | || | | || || ||||| |||| Sbjct 3414 TCATGGT---TAATAAAAAGCATGACGATAGCTGTGGCTTTGGTGTACCTGCATTGAATA 3358 Query 66472 AGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTG 66531 | || |||| || || ||||||||| || ||||||| ||| || || ||||| || | Sbjct 3357 ATGTGGGAGTGGCATGGGTAAACCATCGCTCTGAAAGTAAATTATAGGTTTCAATGGCCG 3298 Query 66532 AGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTT 66591 |||| ||||| |||||| ||||| || |||||||| | ||| ||||| || | || Sbjct 3297 AGTCGATATCTATACCATGAATACCTACAGCTACACGCATGAGCATATGCTGTGGGCGTT 3238 Query 66592 CAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAAT 66651 | | || || | ||||| || | || |||||||| | |||||||| ||||||| Sbjct 3237 CTGCTATATTTCCATCAATTTTTAAAAGATATGATTTTTCGAGTGTTTTAAAGCCAAAAT 3178 Query 66652 AGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 66694 | | || ||| |||| || || || ||| |||| ||| Sbjct 3177 AATCATAACCAAAATCTCTATCATATATTATAGTAGAGTCGAG 3135 >seq324 Length=1196970 Score = 91.5 bits (100), Expect = 2e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 83823 TTTCCAGACATTGTTGAATTCTGTGAGCGTATGGCAAACGAAGGAAAAATAGTTATAGTA 83882 |||||||||| ||| || || |||||| ||||| || | || ||| | ||| |||| Sbjct 298456 TTTCCAGACACTGTAGAGTTTTGTGAGTTGATGGCTGACCAGGGTAAAGTGGTTGTAGTG 298397 Query 83883 GCAGCACTCGATGGGACATTTCAACGTAAACCGTTTAATAATATCTTGGATATTATTCCA 83942 || ||| | ||||| || | ||||| || ||| |||||| | | | |||| Sbjct 298396 GCTGCATTGGATGGTACCTACCAACGCCAAGGCTTTGGAAATATCCTTCAGCTGGTTCCT 298337 Query 83943 TTATCTGAAATGGTGGTAAAACTAACTGCAGTGTGTATGAAATGCTTT 83990 || | |||| |||| ||||| |||||||||||||||||||||||| Sbjct 298336 TTGGCAGAAAGTGTGGAGAAACTTACTGCAGTGTGTATGAAATGCTTT 298289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658098459382240