Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq1224 129 5e-25 seq112 96.9 3e-15 >seq1224 Length=1352561 Score = 129 bits (142), Expect = 5e-25 Identities = 242/351 (69%), Gaps = 11/351 (3%) Strand=Plus/Plus Query 20991 AGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGG 21050 || || |||| ||| || | || || || || || | |||||| || ||||| ||||| Sbjct 1087478 AGCCCAGTGATGTGTGCAAGCATGTATGTGAGCAGAGAGTAGCTAGCAATGTTGAACGGC 1087537 Query 21051 ACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCG---A 21107 ||||||||||||||||| || || | |||||||| ||| || || || | | || Sbjct 1087538 ACCCCGAGGCCCATGTCTGCTGAACGCTGGTACATCTGACACGAGAGATAGCGGCGCTCG 1087597 Query 21108 GCCACGTAAAACTGACACAAAAC-GTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGC 21166 |||||||| ||||| ||| | || ||| || || || |||||||| | | ||||| || Sbjct 1087598 GCCACGTAGAACTG-CACCAGACAGTGGCAGGGGGGCAGAGCCATGGCCCCCAGGTCAGC 1087656 Query 21167 GGGGTTCCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAGA---TC 21223 ||| ||||| || | ||| | |||||| || || | | | || | |||| || Sbjct 1087657 GGGATTCCAAGCACTCATGATGATGCGTCGGTCATCTG---GATTGGTTCGTAGAGTCTC 1087713 Query 21224 CACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTA 21283 | ||| | ||| ||| ||||| || || ||| || ||| || | ||| Sbjct 1087714 AATCACTTGCTGCAACTGATCCACACCTTGTGTAGCGTGGTCCTCGTGCATGCCTCGGTA 1087773 Query 21284 CTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCC 21334 || || ||||| |||| ||| ||||| || ||||| || || |||||||| Sbjct 1087774 CTGGGCGCCAAAGTGTCGCCATTGGAAGCCATACACTGGTCCAAGATCGCC 1087824 >seq112 Length=422422 Score = 96.9 bits (106), Expect = 3e-15 Identities = 183/264 (69%), Gaps = 9/264 (3%) Strand=Plus/Plus Query 20936 GTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGG--GGTCAGG 20993 ||||||| || | ||| ||||| || ||||||||||| || || ||||| ||| | Sbjct 128868 GTGGTTGGCATAGAGGTGCGCGTCGCCGAAGGTGTGCACGAACTCGCCCGGCTGGTA--G 128925 Query 20994 CCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACC 21053 || | ||||||| || ||| | ||||||||| ||| ||||| || || || Sbjct 128926 CCGCAAATCTGAGCGAGCATCATCGTAAACAGGGCGTAGGAGGCAATGTTGAAGGGTACG 128985 Query 21054 CCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAG-CTCCCCCCGAGCCAC 21112 || || ||||||||| | |||||| |||||||||||||| || || || || || Sbjct 128986 CCCAGAAAGATGTCGGCGCTGCGCTGGTAGAGCTGGCAGGACAGCCTGCCGTCG-GCGAC 129044 Query 21113 GTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTT 21172 || ||||| ||| || || || || || ||||| || ||| || ||||||| Sbjct 129045 ATAGAACTGGAACAGGCAATGGCAGGGCGGTAGGGCCATGTGCTCGACATCGCCGGGGTT 129104 Query 21173 CCACGCGCACATAACGATGCGCCG 21196 ||| || | ||||||| |||| Sbjct 129105 CCAGGC---CGAAACGATGTGCCG 129125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427728890633280