Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1514 208 1e-48 seq324 91.5 2e-13 >seq1514 Length=8380 Score = 208 bits (230), Expect = 1e-48 Identities = 757/1176 (64%), Gaps = 28/1176 (2%) Strand=Plus/Minus Query 79639 GCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATG 79698 ||||| || | || | | | ||||| ||||||||||| || ||||| | || ||| Sbjct 4069 GCTACTTCGTCAGGAGCAGTATATTCCATTATTTCAGTACAAAGGTTTGAGCTTTTTATG 4010 Query 79699 GTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGA 79758 || || | |||| ||| ||||| || ||| ||||| ||| | || ||| | || Sbjct 4009 GTGCCAAGGTTTTTTTGGTTACTTTTCGAGTTGGCTGCATCTTTAAATAGCATGTAGGGT 3950 Query 79759 GTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTA---TT 79815 || |||||||| || || ||| | || | ||| | | || | || |||| || Sbjct 3949 GTGCCAGTTTCCATTTGGCTTTCCAATATTTCAAACCATAAGTCTTGGGCTTTTACCGTT 3890 Query 79816 ATAGACTTGTATCTCTT--TTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTC 79873 || ||| || || |||||||||||| |||| || | ||| || | || | Sbjct 3889 TTAC----GTA-CTTTTCCTTCTCTTTCGTAACGTGTGTAAAGCTCTTCAAATGCCTCGC 3835 Query 79874 CCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCAT 79933 | | |||| | || || || ||||||| || ||||| | |||||| | | | || Sbjct 3834 CATAGCAATCGGCCAAGCCTGGGCATTCGTTGGGGCACATTAGCGACCAAACGTCGTTAT 3775 Query 79934 CCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTC 79993 | | || || |||||||| | |||||| ||||| | || ||| ||||| | | | Sbjct 3774 CTTCCACCCGCTTCATAAATAAATCAGGTATCCACATGGCGTAAAAAAGATCACGAGCAC 3715 Query 79994 TATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCC 80053 || || || || || || || | | | | | | | || ||| | ||||| Sbjct 3714 GCATTTCTTCTTTACCGTGGTTTTTCTTCAATTGCAAAAGCTCAAAAACATCGGCATGCC 3655 Query 80054 ACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATC 80113 | || ||||| |||||||| | ||| || ||| ||||||||||||| || | Sbjct 3654 AAGGCTCCAAATATATGGCAAATGAGCCCTTGCGCTTGCCACCTCCCTGATCTACATAGC 3595 Query 80114 TAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCC 80173 |||||| | ||| | || | ||||||||| || || || || || || ||||| || | Sbjct 3594 GAGCGGTATCATTGAATACCCGCAACATTGGTATTATGCCGTTTGAAGTGCCATTTGTAC 3535 Query 80174 CGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCA 80233 | ||||| ||| |||| | | |||| || ||| || || || || ||| Sbjct 3534 CTTTTATATACGAACCAGTGGCCCTTACATTATGTATGCTTAGGCCAATACCACCCGCCG 3475 Query 80234 TTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAA 80293 || || ||| || ||| | ||||| ||||| || || || ||||| || || Sbjct 3474 ATTGTGATATTTTGGCACATTGCTTTAATGTATCGTAAATACCATCTATTGAGTCGTCTT 3415 Query 80294 TCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT---AGTTCCCGCATTAAATA 80350 ||||| | || ||| ||| ||| | | || | | || || ||||| |||| Sbjct 3414 TCATGGT---TAATAAAAAGCATGACGATAGCTGTGGCTTTGGTGTACCTGCATTGAATA 3358 Query 80351 AGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTG 80410 | || |||| || || ||||||||| || || |||| ||| || || ||||| || | Sbjct 3357 ATGTGGGAGTGGCATGGGTAAACCATCGCTCTGAAAGTAAATTATAGGTTTCAATGGCCG 3298 Query 80411 ATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTT 80470 | || ||||| |||||| ||||| || |||||||| | ||| ||||| || | || Sbjct 3297 AGTCGATATCTATACCATGAATACCTACAGCTACACGCATGAGCATATGCTGTGGGCGTT 3238 Query 80471 CAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAAT 80530 | | || || || ||||| || | || |||||||| | |||||||| ||||||| Sbjct 3237 CTGCTATATTTCCATCAATTTTTAAAAGATATGATTTTTCGAGTGTTTTAAAGCCAAAAT 3178 Query 80531 AGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGT 80590 | | || ||| |||| || || || ||| |||| ||| | || ||| | Sbjct 3177 AATCATAACCAAAATCTCTATCATATATTATAGTAGAGTCGAGCAATGCAGCATGTTTTT 3118 Query 80591 TAACTACATCCATGGTGATAC-----TTGAAATAATCGGAGAATGTTTCCCATTTTTAGG 80645 | || |||| ||| |||| ||||||||| | | || | | |||| || Sbjct 3117 TTACAACAT-CAT----ATACTTCTTTTGAAATAAGTGATGCATTTGTATTGGTTTTTGG 3063 Query 80646 ATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAG-tttttttGTTTCCTTGT 80704 || || |||| || |||| | || | | | ||| | || ||||| | || | Sbjct 3062 ATCAATATAGGTGTATAACCTTTTTAT-TGTGCCCGAAAACGACTTATTTGTGTTTTTAT 3004 Query 80705 GTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGATGTTGTGTAGTAC 80764 | ||||| || | |||| ||| || || ||||| || || |||| || | ||||| Sbjct 3003 GAAGATTCGAAATCGCTACTCTTGCCGCCAAAATAGCGTAGTCTGAGTGGCGAGTAGTTA 2944 Query 80765 AAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 80800 ||| || || |||| || |||| | | |||| || Sbjct 2943 AAGAAGCGGCAGTTTCAGCAGCCAAATTATCCAGTT 2908 >seq324 Length=1196970 Score = 91.5 bits (100), Expect = 2e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 97716 TTTCCAGACATTGTTGAATTCTGTGAGCGTATGGCAAACGAAGGAAAAATAGTTATAGTA 97775 |||||||||| ||| || || |||||| ||||| || | || ||| | ||| |||| Sbjct 298456 TTTCCAGACACTGTAGAGTTTTGTGAGTTGATGGCTGACCAGGGTAAAGTGGTTGTAGTG 298397 Query 97776 GCCGCACTTGATGGGACATTTCAACGTAAACCGTTTAATAATATCTTGAATCTTATTCCA 97835 || ||| | ||||| || | ||||| || ||| |||||| | | || |||| Sbjct 298396 GCTGCATTGGATGGTACCTACCAACGCCAAGGCTTTGGAAATATCCTTCAGCTGGTTCCT 298337 Query 97836 TTATCTGAAATGGTGGTAAAACTAACTGCTGTGTGTATGAAATGCTTT 97883 || | |||| |||| ||||| ||||| |||||||||||||||||| Sbjct 298336 TTGGCAGAAAGTGTGGAGAAACTTACTGCAGTGTGTATGAAATGCTTT 298289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718187671539040