Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1514 181 1e-40 >seq1514 Length=8380 Score = 181 bits (200), Expect = 1e-40 Identities = 604/931 (65%), Gaps = 14/931 (2%) Strand=Plus/Minus Query 71722 GCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATG 71781 ||||| || | || | | | ||||| || |||||||| ||||| || | || ||| Sbjct 4069 GCTACTTCGTCAGGAGCAGTATATTCCATTATTTCAGTACAAAGGTTTGAGCTTTTTATG 4010 Query 71782 GTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGA 71841 || || | |||| ||| ||||| || ||| ||||| ||| | || || | || Sbjct 4009 GTGCCAAGGTTTTTTTGGTTACTTTTCGAGTTGGCTGCATCTTTAAATAGCATGTAGGGT 3950 Query 71842 GTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA 71901 || |||||||| || || ||| | || | ||| | | || | || |||| | Sbjct 3949 GTGCCAGTTTCCATTTGGCTTTCCAATATTTCAAACCATAAGTCTTGGGCTTTTACCGTT 3890 Query 71902 TTCTTGTATCTCTT--TTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCC 71959 || ||| || || |||||||||||| |||| || | ||| || | ||| || Sbjct 3889 TTAC-GTA-CTTTTCCTTCTCTTTCGTAACGTGTGTAAAGCTCTTCAAATGC--CTCGCC 3834 Query 71960 A-AGCATT-GTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATC 72017 | |||| | | | || || || ||||| || || ||||| | ||||| | | | ||| Sbjct 3833 ATAGCAATCGGCCAAGCCTGGGCATTCGTTGGGGCACATTAGCGACCAAACGTCGTTATC 3774 Query 72018 ATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 72077 | || || |||||||| | |||||| ||||| | || ||| ||||| | | | Sbjct 3773 TTCCACCCGCTTCATAAATAAATCAGGTATCCACATGGCGTAAAAAAGATCACGAGCACG 3714 Query 72078 ATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 72137 || || || || || || || | | | | | | | || ||| | |||||| Sbjct 3713 CATTTCTTCTTTACCGTGGTTTTTCTTCAATTGCAAAAGCTCAAAAACATCGGCATGCCA 3654 Query 72138 CGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCT 72197 || ||||| |||||||| | ||| || ||| ||||||||||||| || | Sbjct 3653 AGGCTCCAAATATATGGCAAATGAGCCCTTGCGCTTGCCACCTCCCTGATCTACATAGCG 3594 Query 72198 AGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCC 72257 |||||| | ||| | || | ||||||||| || || || || || | ||||| || || Sbjct 3593 AGCGGTATCATTGAATACCCGCAACATTGGTATTATGCCGTTTGAAGTGCCATTTGTACC 3534 Query 72258 GGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCAT 72317 ||||| ||| |||| | | ||| || ||| || || || || ||| Sbjct 3533 TTTTATATACGAACCAGTGGCCCTTACATTATGTATGCTTAGGCCAATACCACCCGCCGA 3474 Query 72318 TTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCAT 72377 || || ||| || ||| | ||||| ||||| || || || ||||| || || | Sbjct 3473 TTGTGATATTTTGGCACATTGCTTTAATGTATCGTAAATACCATCTATTGAGTCGTCTTT 3414 Query 72378 CATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT---AGTTCCCGCATTAAATAA 72434 |||| | || ||| ||| ||| | | || | | || || ||||| ||||| Sbjct 3413 CATGGT---TAATAAAAAGCATGACGATAGCTGTGGCTTTGGTGTACCTGCATTGAATAA 3357 Query 72435 GGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGA 72494 || |||| || || ||||||||| || || |||| ||| || || ||||| || || Sbjct 3356 TGTGGGAGTGGCATGGGTAAACCATCGCTCTGAAAGTAAATTATAGGTTTCAATGGCCGA 3297 Query 72495 TTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTC 72554 || ||||| ||| || ||||| || |||||||| | ||||||||| || | ||| Sbjct 3296 GTCGATATCTATACCATGAATACCTACAGCTACACGCATGAGCATATGCTGTGGGCGTTC 3237 Query 72555 AACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATA 72614 | || || || ||||| || | || |||||||| | |||||||| |||||||| Sbjct 3236 TGCTATATTTCCATCAATTTTTAAAAGATATGATTTTTCGAGTGTTTTAAAGCCAAAATA 3177 Query 72615 GTTGTATGAAAAGTCTCGTTCGTAAATAATA 72645 | || ||| |||| || || || ||| Sbjct 3176 ATCATAACCAAAATCTCTATCATATATTATA 3146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671063394827360