Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_004629.1 Length=280334 Score E Sequences producing significant alignments: (Bits) Value seq2406 89.7 9e-13 seq6557 86.0 1e-11 seq2001 86.0 1e-11 seq4979 84.2 4e-11 >seq2406 Length=10495 Score = 89.7 bits (98), Expect = 9e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 271741 TGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCACTTGCTCTACCG 271800 ||||||| ||||||| ||||||||||||||| | ||||||||||| ||||||||| Sbjct 4542 TGGCTCCCCGACCTGGGCTCGAACCAGGGACCTACGGATTAACAGTCCGGCGCTCTACCG 4601 Query 271801 ACTGAGCTATCACGGAATT 271819 ||||||||||| |||||| Sbjct 4602 ACTGAGCTATCGAGGAATT 4620 >seq6557 Length=877522 Score = 86.0 bits (94), Expect = 1e-11 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 271741 TGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCACTTGCTCTACCG 271800 ||||||| ||||||| ||||||||||||||| | ||||||||||| ||||||||| Sbjct 711190 TGGCTCCCCGACCTGGGCTCGAACCAGGGACCTACGGATTAACAGTCCGGCGCTCTACCG 711249 Query 271801 ACTGAGCTATCACGGAA 271817 ||||||||||| |||| Sbjct 711250 ACTGAGCTATCGAGGAA 711266 >seq2001 Length=3286380 Score = 86.0 bits (94), Expect = 1e-11 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 272869 ATATGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCTA 272928 || ||||||||||| ||||||||||||| ||||| ||||||||||| | |||||| Sbjct 3023592 ATGTGGTGGGCCCACTAGGACTTGAACCTAGGACCAGCTGATTATGAGTCAGCCGCTCTA 3023651 Query 272929 ACCAACTGAGCTATAGGCCC 272948 |||| ||||||||| ||||| Sbjct 3023652 ACCACCTGAGCTATGGGCCC 3023671 >seq4979 Length=1283317 Score = 84.2 bits (92), Expect = 4e-11 Identities = 67/78 (86%), Gaps = 2/78 (3%) Strand=Plus/Plus Query 272872 TGGTGGGCCCAGCA-GGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCTAAC 272930 |||||||||| ||| ||||||||||| |||||| ||||||||||| ||||||| || Sbjct 60128 TGGTGGGCCC-GCACGGACTTGAACCGTGGACCAAAGGATTATGAGTCCTCTGCTCTGAC 60186 Query 272931 CAACTGAGCTATAGGCCC 272948 ||||||||||| |||||| Sbjct 60187 CAACTGAGCTACAGGCCC 60204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 896839490536640