Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_004681.1 Length=75931 Score E Sequences producing significant alignments: (Bits) Value seq4979 241 6e-59 seq2001 154 7e-33 seq2100 96.9 2e-15 >seq4979 Length=1283317 Score = 241 bits (266), Expect = 6e-59 Identities = 548/824 (67%), Gaps = 3/824 (0%) Strand=Plus/Minus Query 66692 ACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGCCGGGTG 66751 ||||| || ||| | |||| || |||||| |||| || ||| | |||||||| Sbjct 188377 ACCGGTTCCCTCGGTTTGGATATTGCGCTGGGCGTCGGTGGCCTGCCGCGTGGCCGGGTT 188318 Query 66752 GTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTGGCC 66811 || |||||||| || || ||||| || || ||| | || || || || || | || ||| Sbjct 188317 GTCGAAATCTATGGTCCGGAATCGTCCGGCAAGACCACGCTCTGCCTGCAGGTCGTCGCC 188258 Query 66812 AATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGACCCC 66871 | ||||||| ||| || || |||| || || || || || | || || || Sbjct 188257 GAAATGCAGAAGCTCGGCGGGGTTGCTGCCTTTATTGATGCCGAACATGCGCTCGATCCG 188198 Query 66872 GAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGGACACT 66931 | || ||| || ||||| || | ||| | |||| || | || ||||| || Sbjct 188197 CAATATGCCCAGAAACTCGGCGTCAATGTCGGCGACCTGCTGATCTCGCAACCGGATACC 188138 Query 66932 GGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTC 66991 ||||| ||||| || || |||| ||| | || || ||| || | | |||| | Sbjct 188137 GGCGAACAGGCGCTCGAAATCGCCGACATGCTGGTGCGGTCCGGGTCGGTCGACATCATT 188078 Query 66992 GTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGAC 67051 ||| ||||||| ||||| || || ||||| ||||| |||| ||||| || || ||| Sbjct 188077 GTCATTGACTCCGTGGCCGCGCTCACCCCGCGTGCCGAAATCGAGGGCGAGATGGGCGAC 188018 Query 67052 AGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACTGGCACC 67111 || || ||||| || ||||| ||| ||||| |||||||||| || | || | Sbjct 188017 CAGATGGTTGGGCTGCATGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTGACCGCCAAC 187958 Query 67112 ATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAAC 67171 ||| | ||||| |||||| ||| |||||||| | ||| ||||||||| | Sbjct 187957 ATCAAGAAGACCAATACGCTGGTTGTCTTCATCAACCAGATCCGCATGAAGATCGGTGTC 187898 Query 67172 GTGGGCTACGGCCCGAATGAGACCACCACGGGCGGAAAGGCTTTGAGGTTCTACGCCTCA 67231 || | |||| || || |||||||| || || || || | | ||| ||||| || Sbjct 187897 ATG---TTCGGCTCGCCGGAAACCACCACCGGTGGCAATGCGCTCAAGTTTTACGCTTCG 187841 Query 67232 GTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAAC 67291 || ||| | || | || || |||| | | ||| | ||||| || | | |||||| | Sbjct 187840 GTGCGCCTCGACATTCGCCGTATCGGCGCGATCAAGAAGGGCGACGAAGTTATCGGCAGC 187781 Query 67292 CGCACCCGGGTGAAAGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAACGCCGAGTTC 67351 ||| ||| || ||||||||||||||| | || || || |||| | ||| ||| Sbjct 187780 GAAACCAAGGTCAAGGTCGTCAAGAACAAGGTCGCGCCCCCCTTCCGCGAAGCCATCTTC 187721 Query 67352 TCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTGGCCGTGTCG 67411 | || | ||||| ||||| ||||| || ||| |||| || |||| ||| || || Sbjct 187720 GACATCCTCTACGGTGAGGGAATCTCCCGACAGGGCGAAGTCGTCGAAATGGGTGTCGCG 187661 Query 67412 CAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTACGGGGACAAGAACGTCGCTCAG 67471 || ||||| | || || || ||||||| | ||| || | |||| | | ||| Sbjct 187660 CACAAGCTGGTCGACAAATCAGGTGCCTGGTACGCCTACAAGGGCGAGAAAATTGGCCAG 187601 Query 67472 GGCAAGCCCAAGGCCGTCCAGTGGCTCAAGGCCAACCCGGACAT 67515 |||||| ||| ||| | ||| |||||||| |||| || || Sbjct 187600 GGCAAGGACAATGCCCGCGAGTTTCTCAAGGCACACCCAGAGAT 187557 >seq2001 Length=3286380 Score = 154 bits (170), Expect = 7e-33 Identities = 427/649 (66%), Gaps = 13/649 (2%) Strand=Plus/Plus Query 66708 TGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGCCGGGTGGTGGAAATCTACGGCC 66767 ||||| ||| || || ||||||| | ||| | || |||||| | || || | |||| Sbjct 2301338 TGGACATCGCGCTCGGAGTCGGGGGCTTGCCGCGCGGACGGGTGATTGAGATTTTTGGCC 2301397 Query 66768 CAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTGGCCAATGCGCAGAAGGCCG 66827 | || || || || ||| | || || ||||| | ||| | | |||||| ||| Sbjct 2301398 CGGAGTCGTCCGGCAAGACGACGATGACGCTCCATTGTATTGCCGAGGTTCAGAAGACCG 2301457 Query 66828 GTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGACCCCGAGTACGCCAAGGCGC 66887 | ||| || |||| |||||| || || || ||||||| || ||| | || Sbjct 2301458 GCGGCGTGGCGGCCTTCATCGATGCGGAACATGCCCTGGATTTGACCTATGCCCAAAAGC 2301517 Query 66888 TCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGG 66947 | || ||| | || | | | ||| |||||||| || |||||||||||| ||| Sbjct 2301518 TGGGAGTGCAGGCAGATGAGTTGCTTGTGTCCCAGCCGGATACCGGCGAGCAGGCCTTGG 2301577 Query 66948 AGATCGTTGACCTCCTCGTCA--AGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGT 67005 | |||| ||| || || ||| |||| | | || | |||| || || || || Sbjct 2301578 AAATCGCTGAGACGCTGGTTCGCAGTGGAGCGATC-GACC-TGATCGTGGTGGATTCGGT 2301635 Query 67006 GGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCT 67065 || || || ||| || || || |||||||||| || || || ||| | ||| | Sbjct 2301636 CGCCGCGCTCACGCCACGGGCTGAAATCGAAGGCGAAATGGGCGATTCTCATATGGGCTT 2301695 Query 67066 GCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACTGGCACCATCTCCAGCACCAA 67125 ||| ||||| ||||||||||||||| |||| ||||| || | | ||||| | | | Sbjct 2301696 GCAGGCGCGGCTCATGTCGCAGGCCTTGCGTAAGCTGACGGCTGCTATCTCGAAGTCTCA 2301755 Query 67126 CACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCC 67185 ||| | | | |||||||| | ||| |||||| || ||| | |||| Sbjct 2301756 GACGACATTGATTTTCATCAACCAGATCCGCATGAAGATTGG---GGTGATGTTCGGC-- 2301810 Query 67186 GAAT---GAGACCACCACGGGCGGAAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGA 67242 ||| || ||||| || ||||| || || |||| |||||| |||| || ||| | || Sbjct 2301811 -AATCCCGAAACCACGACCGGCGGGAATGCGTTGAAGTTCTATTCCTCGGTTCGCCTTGA 2301869 Query 67243 TGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGT 67302 | | || ||||||| | | || || || | || | | || ||||| ||||| Sbjct 2301870 TATTCGCCGCATCGAGTCTGTAAAAGAGGGGCAGGATGTGATGGGGAACCGGGTGCGGGT 2301929 Query 67303 GAAAGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAACGCCGAGTTC 67351 ||| |||||||| |||||| |||| |||||| ||| | || |||||| Sbjct 2301930 GAAGGTCGTCAAAAACAAGATGGCGCCGCCGTTTCGCCAGGCGGAGTTC 2301978 >seq2100 Length=6174 Score = 96.9 bits (106), Expect = 2e-15 Identities = 184/271 (68%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 66687 TTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGCC 66746 || ||||||| || | | || ||| ||| ||||| | || || ||| | |||| Sbjct 289 TTTCCACCGGGTCCCTGGGGCTTGACATCGCCCTGGGAGTGGGCGGCCTGCCGCGCGGCC 230 Query 66747 GGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGG 66806 | ||||| |||||||||||||| |||||||| || ||| | || || || || | | Sbjct 229 GCGTGGTCGAAATCTACGGCCCGGAATCTTCGGGCAAGACCACGCTCACGCTGCAGGTGA 170 Query 66807 TGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGG 66866 | ||| | ||| ||| ||| ||| ||||| |||||| || || ||| | || | Sbjct 169 TCGCCGAGATGCAAAAGCTCGGCGGCGTGTGCGCCTTCATCGATGCCGAACACGCGCTCG 110 Query 66867 ACCCCGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGG 66926 | | | ||||| | |||||| ||| |||| | |||| | | ||||| | Sbjct 109 ATACGCAATACGCGCAAAAGCTCGGCGTGAACCTGCAAGACCTGCTCATCAGCCAGCCCG 50 Query 66927 ACACTGGCGAGCAGGCCCTGGAGATCGTTGA 66957 |||| ||||||||||| ||||| ||||| || Sbjct 49 ACACCGGCGAGCAGGCACTGGAAATCGTCGA 19 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242827655355632