Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_004688.1 Length=110865 Score E Sequences producing significant alignments: (Bits) Value seq2001 113 3e-20 seq664 100 2e-16 seq6557 95.1 9e-15 >seq2001 Length=3286380 Score = 113 bits (124), Expect = 3e-20 Identities = 130/173 (75%), Gaps = 3/173 (2%) Strand=Plus/Plus Query 99394 TTGATGAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATG 99453 ||||| | ||| || | ||||||||| || ||||| ||||||||||| || ||||| || Sbjct 680500 TTGATCAAGCCGGTGAGCACATCCACTGACGGCCGTTGCGTCGCCAGCACAAGATGGATA 680559 Query 99454 CCGGCCGCACGCGCCTTCTGCGCGATGCGGACAATGTTGGCCTCAACCTCTTTCTTGTAG 99513 |||| ||| | ||| |||| || | || | || ||| |||| || |||||| | | Sbjct 680560 CCGGACGCCCTGGCCATCTGTGCCAGCCGAGCGATCTTGTCCTCGACATCTTTC--GGCG 680617 Query 99514 CCACCCATCATGAGATCAGCGAGTTCATCCACCACTACCACGATGTAGGGGAG 99566 ||| ||||||| | |||||| || ||||| | || |||||||| ||||| || Sbjct 680618 CCA-CCATCATTAAATCAGCCAGCTCATCGATCATCACCACGATATAGGGCAG 680669 >seq664 Length=24935 Score = 100 bits (110), Expect = 2e-16 Identities = 137/189 (72%), Gaps = 7/189 (4%) Strand=Plus/Plus Query 99373 AGCCGCGAGGGCACGTTGCTCTTGATGAGGCCCGTCACCACATCCACGGAGGGCCGCTGC 99432 || || | ||| | |||| |||||| || ||||| | ||||||||| ||||||||| Sbjct 13786 AGGCGGGTGGGAATGTTGGCCTTGATAAGCCCCGTGATGACATCCACGCTCGGCCGCTGC 13845 Query 99433 GTCGCCAGGACGAGATGAATGCCGGCCGCACGCGCCTTCTGCGCGATGCGGACAATGTTG 99492 || ||||| | || || |||||| || |||||||||||||| | ||| |||| Sbjct 13846 GTGGCCAGAATCAGGTGGATGCCGCAGGCCCGCGCCTTCTGCGCCAGCCGGGCAATCAGC 13905 Query 99493 GCCTCAACCTCTTTCTTGTAGCCAC--CCATCATGAGATCAGCGAGTTCATCCACCACTA 99550 | || | | |||||| |||| ||||||| || || || |||||||| | ||| | Sbjct 13906 TCTTCGATC---TTCTTG--CCCACCACCATCATCAGGTCGGCCAGTTCATCGATCACCA 13960 Query 99551 CCACGATGT 99559 ||||||||| Sbjct 13961 CCACGATGT 13969 >seq6557 Length=877522 Score = 95.1 bits (104), Expect = 9e-15 Identities = 140/198 (71%), Gaps = 3/198 (2%) Strand=Plus/Minus Query 99366 GAACGACAGCCGCGAGGGCACGTTGCTCTTGATGAGGCCCGTCACCACATCCACGGAGGG 99425 ||| ||||| || | || | |||| |||||| ||||| || | ||| || || || Sbjct 105013 GAAGGACAGGCGGGTCGGGATGTTGGCCTTGATCAGGCCGGTGATCACGTCGACACTCGG 104954 Query 99426 CCGCTGCGTCGCCAGGACGAGATGAATGCCGGCCGCACGCGCCTTCTGCGCGATGCGGAC 99485 |||||||| || || || ||||| || || | || ||||| |||||||||| |||| | Sbjct 104953 ACGCTGCGTGGCGAGCACAAGATGGATACCCGAAGCCCGCGCTTTCTGCGCGAGGCGGGC 104894 Query 99486 AATGTTGGCCTCAACCTCTTTCTTGTAGCCACCCATCATGAGATCAGCGAGTTCATCCAC 99545 || | |||| |||| ||| | | || ||||||| || || || ||||| || | Sbjct 104893 GATCTGTTCCTCGACCTTTTT---GCCGACAACCATCATCAGGTCGGCCAGTTCGTCGAT 104837 Query 99546 CACTACCACGATGTAGGG 99563 | || ||||||||||| Sbjct 104836 GATGACGACGATGTAGGG 104819 Score = 86.0 bits (94), Expect = 4e-12 Identities = 195/287 (68%), Gaps = 10/287 (3%) Strand=Plus/Minus Query 99582 GTGGCGCACGCCAGCCTCCTGCATCTGCCGGTATCGGTCGTCCATCTCTACGGTGAGCCA 99641 || ||||||||| | || |||| | ||| || | |||||||| ||||| || Sbjct 104713 GTTGCGCACGCCCATCGCCGACATCAACTTGTAGCGCTTCTCCATCTC---GGTGACGCA 104657 Query 99642 CC---GCAGCGTTTTCACCGCCT-CGTCAGCCTCTGTAACCACGGGCTGGAGAAGGTGGG 99697 || |||||| || |||||| | ||| || || || || ||| || ||||| | Sbjct 104656 CCAGTGCAGCGCGTTAGCCGCCTGCTTCATG-TCGGTGACGACCGGCGCCAGCAGGTGCG 104598 Query 99698 GGATACCGTTGTACGGGGTGAGCTCGACACAT-TTGGGGTCGATCATGATGAGTTTGACC 99756 |||| || | ||| | ||||| | ||| |||||||||| ||||| || ||| Sbjct 104597 GGATGCCTTCGTAGATCGAAAGCTCAAG-CATCTTGGGGTCGACCATGAGCAGACGCACC 104539 Query 99757 CGATCAGGGGTCGCCCGGTAGAGCAGCGAAACCAGCATTGAGTTGATGAAGCTGGACTTG 99816 |||| || ||| |||||||| ||| | | ||| | ||||| | |||||| Sbjct 104538 TGATCCGGCTCGGCCTTGTAGAGCATCGACAAGATCATCGCGTTGACACCGACCGACTTG 104479 Query 99817 CCCGATCCGGTCGCGCCAGCCACCAGCAGATGCGGCATCTTAGCCAG 99863 ||||| ||||||| || || |||||||||||||| || | ||||| Sbjct 104478 CCCGAACCGGTCGTTCCGGCGACCAGCAGATGCGGTGTCCTGGCCAG 104432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354604144474296