Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_005135.1 Length=173591 Score E Sequences producing significant alignments: (Bits) Value seq4979 89.7 6e-13 seq2001 82.4 8e-11 >seq4979 Length=1283317 Score = 89.7 bits (98), Expect = 6e-13 Identities = 154/221 (70%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 7013 ACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGCGAAATTGCAACTAAAC 7072 || |||||||| || || || ||||| | || || ||||| || | | || |||| Sbjct 289712 ACCGCCTGGTTGGCCTGAGAGCCGGAGTTTGGCTGGACGTTGGCAGCCTCGGCACCAAAC 289653 Query 7073 AG-TTCTTTAGCACGCTCAATTGCCAGGTTCTCGATTTCATCGGCTTTTACGCAGCCGCC 7131 || ||||| || || ||||| ||||| | ||| | ||| | | |||| ||||| Sbjct 289652 AGCTTCTTGAGG-CGGTCAATGGCCAGTTGTTCGGCGACGTCGACGTGCTCGCAACCGCC 289594 Query 7132 ATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGTAAAAATAGAACCCTGTGC 7191 || || |||||||||||||| || || |||||||||||||| | || ||||| || Sbjct 289593 GTAGTAACGTTTGCCCGGATAACCTTCGGCATACTTGTTGGTCAGTTGGGATCCCTGGGC 289534 Query 7192 TTTCATAACATCGTCTGACACATAGTTTTCGGACGCAATCA 7232 | ||| || | | ||| |||||||| || || |||| Sbjct 289533 CTCCATGACCGCTTTGCTCACGTAGTTTTCTGATGCGATCA 289493 >seq2001 Length=3286380 Score = 82.4 bits (90), Expect = 8e-11 Identities = 178/264 (67%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 6911 ATCTTGCCCGAAGCATTCGCTTTGTGCCCGTGAGTGAGATGGCCGCCGCAGTCCAAGGAC 6970 ||| ||||||| | || | ||| |||||||| || || ||||| | | | | | Sbjct 978632 ATCATGCCCGAGAAACTCACCTTGCTGCCGTGAGTCAGGTGCCCGCCATGGGCGAGGTCC 978573 Query 6971 ATAGCGAGAACCGAATCACCCGGCTTCAGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGT 7030 ||| | || | | || ||||| || |||| || | || | ||| |||||| Sbjct 978572 ATACCCAGGATGGTGTCGCCCGGTTTGAGGACGGCGAGATAGGCCGCCATGTTTGCAGAG 978513 Query 7031 GAACCGGAATGAGGTTGAACGTTTGCGAAAT-TGCAACTAAACAGTTCTTTAGCACGCTC 7089 |||||||||||||| |||||||| || | ||| | || || ||||| || |||| Sbjct 978512 GAACCGGAATGAGGCTGAACGTTGACGTGGTCTGC-GCCGAAGAGCTCTTTGGCCCGCTG 978454 Query 7090 AATTGCCAGGTTCTCGATTTCATCGGCTTTTACGCAGCCGCCATAATACCGTTTGCCCGG 7149 ||| || || |||| |||| | | |||||||||| || || |||||||| || Sbjct 978453 AATAGCGAGTGCTTCGACGGTATCGACATGCTCGCAGCCGCCGTAGTAGCGTTTGCCGGG 978394 Query 7150 ATATCCCTCAGCATACTTGTTGGT 7173 ||| || || || || || ||||| Sbjct 978393 ATACCCTTCGGCGTATTTATTGGT 978370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555300471726560