Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq3957 129 1e-24 seq60 84.2 5e-11 >seq3957 Length=668572 Score = 129 bits (142), Expect = 1e-24 Identities = 145/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 |||||||||| || ||||| || | || | ||| || || || ||||| ||||| || | Sbjct 478876 CTTTCTGAATGTTGTAGTCTGACAATGTGCGACCATCCTCAAGCTGTTTGCCAGCGAAGA 478817 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTT 104489 | || | ||| |||||||| || || || ||||| || || ||||| || || ||||| | Sbjct 478816 TCAGTCGCTGCTGATCAGGTGGAATGCCCTCTTTGTCTTGGATCTTGGCCTTCACATTAT 478757 Query 104490 CTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAA 104549 | | || || ||| || ||||||| || || ||||| || || | ||||||||| | Sbjct 478756 CGATTGTGTCTGAAGGCTCAACCTCTAAGGTTATGGTCTTCCCTGTTAATGTTTTTACGA 478697 Query 104550 ATATCTGCATTTTG 104563 | |||||||||||| Sbjct 478696 AGATCTGCATTTTG 478683 >seq60 Length=147544 Score = 84.2 bits (92), Expect = 5e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553 |||||||||||| | |||||| | | |||| || || | |||||||| ||||| Sbjct 28488 TGGTGGTATTATTTTTCTAAACTACTGGAATTTTGTGACACGTTTTTCTTCATTTTACGA 28547 Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTACTTTG 78613 |||||| ||| || | | ||||| ||||| |||||||||| || ||||| | || Sbjct 28548 AAGAAAAATAACCAGTTGACATTTCTGCATGTGTATCATCATTCAACCATGTTCTCCTTA 28607 Query 78614 GGATGGATAGGTATTAAATGG 78634 | ||||| || ||||||||| Sbjct 28608 TGGTGGATTGGAATTAAATGG 28628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151265098289488