Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq6557 114 8e-21 seq367 111 1e-19 seq2001 87.8 1e-12 seq450 84.2 1e-11 >seq6557 Length=877522 Score = 114 bits (126), Expect = 8e-21 Identities = 228/335 (68%), Gaps = 2/335 (1%) Strand=Plus/Plus Query 72253 GCATGATTATGATCGACTACCTGCAACTTATGCGCGTCCCCGAGCTGCAAGATAACCGAA 72312 || |||| ||||||||||| | || | ||| ||| | | || | ||| ||||| Sbjct 45998 GCCTGATCGTGATCGACTACATCCAGTTGATGAGCGGCAACCGGCAGGGAGAGAACCGGG 46057 Query 72313 CGCTGGAAATTGCCGAGATTTCTCGCTCACTGAAGGCGTTGGCGAAGGAATTACAAGTAC 72372 | |||| | |||| || || || || | ||| || |||| ||||| ||||| |||| Sbjct 46058 CCACGGAAGTCTCCGATATCTCGCGTTCGATCAAGTCGCTGGCCAAGGAGTTACAGGTAC 46117 Query 72373 CGGTGGTGGCATTGTCACAACTTAATCGATCGCTTGAACAGCGTGCGGACAAACGACCGG 72432 || | || || |||| || || || | | || |||| ||||| || ||| Sbjct 46118 CGATCGTCGCCCTGTCGCAGCTGTCGCGCAAGGTCGAGGAGCGCAACGACAAGCGTCCGA 46177 Query 72433 TAAATTCAGATTTACGTGAATCAGGAGCAATTGAGCAGGACGCAGACCTGATTATGTTTC 72492 | | || || | || ||||| || || ||||||||||| |||||| | ||| || | Sbjct 46178 TGATGTCCGACCTGCGCGAATCCGGCGCCATTGAGCAGGATGCAGACGTTATTTTGATGA 46237 Query 72493 TGTATCGCGACGAAGTTTATCACCCGGATA-GCGAAATGAAGGGCATTGCCGAGGTAATT 72551 |||| ||||| ||| || | || |||| || | |||||||| ||||| || ||| Sbjct 46238 TGTACCGCGAGGAATACTACAAGCCCGATACGCCCGA-CAAGGGCATCGCCGAAGTGATT 46296 Query 72552 ATCGGAAAGCAACGAAATGGCCCAATTGGCACGGT 72586 ||||| ||||| || || ||||| | ||||| || Sbjct 46297 ATCGGCAAGCAGCGTAACGGCCCGACCGGCACTGT 46331 >seq367 Length=21361 Score = 111 bits (122), Expect = 1e-19 Identities = 112/143 (78%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 8225 GCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGA 8284 ||||| ||||| ||||| |||||||||| ||||||||||| ||||||||| |||| ||| Sbjct 12957 GCATCAACACCGATGTGCACCTTCATGCCGAAGTGCCACTGCTTGCCTTTCCTGGTTTGA 12898 Query 8285 TGCATCTCCGGATCGCGTTGCT-GCTCTTTGTTCTTGGTCGAGCTGGGTGCCTCAATGAT 8343 ||||| || | |||||| ||| | || |||||||||||||| || || |||| | Sbjct 12897 TGCATTTCGGTATCGCGC-GCTCGTTCCTTGTTCTTGGTCGAAGGAGGCGCTGCAATCAG 12839 Query 8344 GGTGGCATCGACCAAGGTGCCTT 8366 |||||||| || | || |||| Sbjct 12838 CGTGGCATCAACAATCGTACCTT 12816 >seq2001 Length=3286380 Score = 87.8 bits (96), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 8/144 (6%) Strand=Plus/Plus Query 72441 GATTTACGTGAATCAGGAGCAATTGAGCAGGACGCAGACCTGATTATGTTTCTGTATCGC 72500 || || |||||||| || || || ||||||||||| ||| || | |||||| | |||||| Sbjct 1539164 GACTTGCGTGAATCCGGCGCGATCGAGCAGGACGCCGACGTGGTCATGTTTATCTATCGC 1539223 Query 72501 GACGAAGTTTATCACCCGGA----TAGCGAAATGAAGGGCATTGCCGAGGTAATTATCGG 72556 || || || ||| ||| | | ||||| || |||||||| ||| | || ||| | Sbjct 1539224 GAAGATGTCTATGACCAGAACTCTGAGCGA----AAAGGCATTGCTGAGATTATCATCAG 1539279 Query 72557 AAAGCAACGAAATGGCCCAATTGG 72580 ||||| ||||| || || ||||| Sbjct 1539280 CAAGCATCGAAACGGGCCGATTGG 1539303 >seq450 Length=27002 Score = 84.2 bits (92), Expect = 1e-11 Identities = 215/323 (67%), Gaps = 7/323 (2%) Strand=Plus/Minus Query 72267 GACTACCTGCAACTTATGCGCGTCCCCGAGCTGCAA----GATAACCGAACGCTGGAAAT 72322 |||||||||||||| ||| ||| | ||||| || || ||||| || | || Sbjct 21515 GACTACCTGCAACTGATGAGCG-GCTCGAGCACGAACGAGGAAAACCGGGCGACGACGAT 21457 Query 72323 TGCCGAGATTTCTCGCTCACTGAAGGCGTTGGCGAAGGAATTACAAGTACCGGTGGTGGC 72382 | ||| || || ||| ||||| || |||| |||||||| ||| |||||| | || Sbjct 21456 CGGCGAAATCTCGCGCGGGCTGAAATCGCTGGCCAAGGAATTGCAATGTCCGGTGATTGC 21397 Query 72383 ATTGTCACAACTTAATCGATCGCTTGAACAGCGTGCGGACAAACGACCGGTAAATTCAGA 72442 ||||| ||| | || || ||| | || ||| | ||||| || ||| | | || Sbjct 21396 CTTGTCGCAATTGAACCGCTCGGTGGAGACGCGGCCCGACAAGCGCCCGATGATGAGTGA 21337 Query 72443 TTTACGTGAATCAGGAGCAATTGAGCAGGACGCAGACCTGATTATGTTTCTGTATCGCGA 72502 | || ||||| || || || || ||||| || ||| |||| ||||| | || ||||| Sbjct 21336 CCTGCGGGAATCGGGCGCCATCGAACAGGATGCCGACGTGATCATGTTCATCTACCGCGA 21277 Query 72503 CGAAGTTTATCACCCGGATAGCGAA-ATGAAGGGCATTGCCGAGGTAATTATCGGAAAGC 72561 ||| || || ||| |||| | |||| | || ||| | || ||||| |||| Sbjct 21276 CGAGTACTACAACAAGGA-CTCGAAGGAGCCGGGCGTGGCTGAGATCATCATCGGCAAGC 21218 Query 72562 AACGAAATGGCCCAATTGGCACG 72584 | || || || || | |||||| Sbjct 21217 AGCGCAACGGGCCCACGGGCACG 21195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 303201805844556