Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq402 111 8e-20 seq2291 109 3e-19 >seq402 Length=946383 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 148689 TGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 148630 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 148629 TGAGCTAATGGGCCG 148615 Score = 105 bits (116), Expect = 3e-18 Identities = 75/86 (87%), Gaps = 3/86 (3%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||||| |||||| || |||||||||| |||||||||||||||||||||||| Sbjct 149794 AAAAAATCA---TGGCCCGTGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGAC 149738 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||| ||||| Sbjct 149737 GCTCTAACCAACTGAGCTAACGGGCC 149712 Score = 105 bits (116), Expect = 3e-18 Identities = 75/86 (87%), Gaps = 3/86 (3%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||||| |||||| || |||||||||| |||||||||||||||||||||||| Sbjct 150339 AAAAAATCA---TGGCCCGTGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGAC 150395 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||| ||||| Sbjct 150396 GCTCTAACCAACTGAGCTAACGGGCC 150421 >seq2291 Length=296724 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 128206 TGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 128265 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 128266 TGAGCTAATGGGCC 128279 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 128454 TGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 128513 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 128514 TGAGCTAATGGGCC 128527 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261462402954736