Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_006552.1 Length=65195 Score E Sequences producing significant alignments: (Bits) Value seq3628 179 2e-40 seq4979 113 2e-20 >seq3628 Length=2627 Score = 179 bits (198), Expect = 2e-40 Identities = 230/312 (74%), Gaps = 9/312 (3%) Strand=Plus/Plus Query 11201 ACTACCTCGGTGCTGTAGTGGTCCTGGCCGTCCTGGCCCTGCCACTTGCGGGTGCGTAGG 11260 || ||||||||||||||| ||||||| || | |||| ||||||||||||||||||| | | Sbjct 315 ACCACCTCGGTGCTGTAGCGGTCCTGTCCCTGCTGGTCCTGCCACTTGCGGGTGCGGA-G 373 Query 11261 CTG-CCTTCGATGTAGACCTGGGAGCCCTTTCGCAGGTATTGCGCTGCGATTTCGGCCAG 11319 ||| |||||||||||||||| | |||||| |||||| | || | || | || |||| Sbjct 374 CTGACCTTCGATGTAGACCTTGCTGCCCTTGCGCAGGAAGCGCTCCGCAACCCCGACCAG 433 Query 11320 CC---GGCCAAAGAGCACGACCCGGTGCCACTCGGTGCGCTCCTGCTGCTGGCCGGTCTG 11376 | | ||||| | | ||| |||||||||||||||||||||| | | ||||| | Sbjct 434 ACCTTCGGAAAAGATCGCAACCGTGTGCCACTCGGTGCGCTCCTGCCGGTCACCGGTATT 493 Query 11377 CTTGTCTTTCCAGCTTTCGCTAGTGGCCAGACTGAGGGAGGTGACC--GCCTTTCCGCCC 11434 |||||||||||||||||| ||||| | | || | | |||| ||| ||| | Sbjct 494 CTTGTCTTTCCAGCTTTCTGACGTGGCGATGCGGATGTTGCAGACCCGGCC--ACCGTTC 551 Query 11435 GGGGTAGATCTTGCGTCTGGATCCTGGCCCAGATGGCCGACCAGGATTACCTTGTTCACT 11494 | || | | || ||||| ||||||| |||||||||||| |||||||| || Sbjct 552 TGAAACGAGCGGACCTCCGGATCGGCCCCCAGATTGCCGACCAGGATGACCTTGTTGACG 611 Query 11495 CCGCGTGCCATG 11506 | || ||||||| Sbjct 612 CTGCCTGCCATG 623 >seq4979 Length=1283317 Score = 113 bits (124), Expect = 2e-20 Identities = 200/290 (69%), Gaps = 4/290 (1%) Strand=Plus/Minus Query 11206 CTCGGTGCTGTAGTGGTCCTGGCCGTCCTGGCCCTGCCACTTGCGGGTGCGTAGGCTGCC 11265 |||||| |||| | |||||||| |||| | | |||||| ||||| || | ||||| Sbjct 318533 CTCGGTCGTGTAACGCTCCTGGCCTTCCTTGTCGGTCCACTTCCGGGTACGGATACTGCC 318474 Query 11266 TTCGATGTAGACCTGGGAGCCCTTTCGCAGGTATTGCGCTGCGATTTCGGCCAGCCGGCC 11325 |||| |||| ||| || |||||| || || || |||| | ||| |||||| || Sbjct 318473 CTCGACATAGATCTGCGATCCCTTTTTAAGATACTGGCCTGCAACTTCAGCCAGCTTTCC 318414 Query 11326 --AAAGAGCACGACCCGGTGCCACTCGGTGCGCTCCTGCTGCTGGCCGGTCTGCTTGTCT 11383 ||| || | | || ||||||||||| | || | || || |||||| |||||| Sbjct 318413 GAAAAAAGAA--ATGCGATGCCACTCGGTCTGTTCTTTCTTCTCTCCGGTCGTCTTGTCC 318356 Query 11384 TTCCAGCTTTCGCTAGTGGCCAGACTGAGGGAGGTGACCGCCTTTCCGCCCGGGGTAGAT 11443 |||||| ||||||| || |||| | | | | | | ||||| || | | ||| || Sbjct 318355 TTCCAGTTTTCGCTGGTCGCCACAGTAATGTTGCAAATCGCCTCGCCACTGGCCGTATAT 318296 Query 11444 CTTGCGTCTGGATCCTGGCCCAGATGGCCGACCAGGATTACCTTGTTCAC 11493 || | || ||||||| |||||||| ||| || | ||| | || || || Sbjct 318295 CTGACTTCCGGATCCTTGCCCAGATTGCCAACGATAATTGCTTTATTAAC 318246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 208476238764976