Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq6036 735 0.0 >seq6036 Length=8020 Score = 735 bits (814), Expect = 0.0 Identities = 795/1043 (76%), Gaps = 14/1043 (1%) Strand=Plus/Plus Query 170649 TTTCAGGATGGGACGAGTTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTG 170708 ||||| |||||| || |||| ||| | || ||||| || || | ||| | | Sbjct 25 TTTCATTATGGGAACGTTTCTGTGGTTGGATTACTAGTACTGAAAACCGTTTATACATCG 84 Query 170709 GTTGGTTTGGTGTCTTAATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAG 170768 ||||||||||| |||||| |||| | |||| || || |||||| ||| | | Sbjct 85 GTTGGTTTGGTTGTTTAATGTTCCCTACATTATTAACAGCAACTTCTTGTTACATCATCG 144 Query 170769 CATTCATCGCTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTT 170828 |||||||||| ||||||||||| |||||||| || ||| | || ||||| || ||||| | Sbjct 145 CATTCATCGCAGCTCCTCCAGTTGATATCGATGGTATCCGTGAGCCAGTAGCAGGTTCAT 204 Query 170829 TCTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGAT 170888 | ||||| ||||||||||||||||||||||| || | || ||| ||||| || || Sbjct 205 TATTATACGGTAACAACATCATCTCTGGTGCAGTTATCCCTAGTTCTAACGCTATCGGTA 264 Query 170889 TACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTC 170948 | |||||||| || || ||||||||||| | || || |||||||| |||||||| |||| Sbjct 265 TGCACTTCTACCCAATTTGGGAAGCAGCTTCAATCGATGAGTGGTTATACAACGGTGGTC 324 Query 170949 CTTACCAGTTAGTTATTTTCCACTTCCTTATT-GGAATCTCTGCCTACATGGGTAGACAG 171007 ||||||| ||| | ||| ||||| |||||| ||| | | | ||||||||| | | Sbjct 325 CTTACCAATTAATCGTTTGTCACTT-CTTATTAGGAGTAGCATCTTACATGGGTCGTGAA 383 Query 171008 TGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCT 171067 |||||| |||| ||| | |||| ||| | |||||||| | ||||| | ||| || || Sbjct 384 TGGGAATTATCTTACCGTTTAGGTATGCGTCCTTGGATCTTCGTAGCTTTCTCTGCTCCA 443 Query 171068 GTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGAT 171127 ||| | ||||| | |||||||||| | || || ||| | ||||| ||||||||||||||| Sbjct 444 GTAGCAGCAGCTTCTGCAGTATTCTTAGTATACCCAATTGGTCAAGGTTCATTCTCTGAT 503 Query 171128 GGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACAC 171187 |||||||| ||||||| || ||||| |||||||||||||| || |||||||| || ||| Sbjct 504 GGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCTGAGCAC 563 Query 171188 AACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTC 171247 ||||| |||||||||| ||||| ||||| ||||| || ||| | || |||||| | | Sbjct 564 AACATTTTAATGCACCCATTCCACATGGCTGGTGTTGCTGGTGTATTTGGTGGTTCTTTA 623 Query 171248 TTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAAC 171307 ||| || ||||||||||| |||| || |||||| |||| | || |||||| ||| Sbjct 624 TTCTCAGCTATGCACGGTTCATTAGTAACTTCTTCTTTAATTCGTGAAACAACT--GAAA 681 Query 171308 GAGAGTCAA--AACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTG 171365 | || |||| |||||||| || || ||||| |||||||||||||| || ||||| |||| Sbjct 682 GCGAATCAACTAACTACGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTG 741 Query 171366 CTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTT 171425 | ||||| || ||||||||| | ||||||||||| || || |||||||||||||||||| Sbjct 742 CAGCTCACGGTTACTTCGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTG 801 Query 171426 CATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTA 171485 | |||||||||||| | ||| ||| || || | || | |||||||| ||||||||| Sbjct 802 CTTTACACTTCTTCTTAGCTTTATGGCCAGTTTTAGGTATCTGGTTAACTGCTATGGGTA 861 Query 171486 TCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAA 171545 | |||| ||||| |||||| | ||||| ||||||||||||||||||||||||||| || Sbjct 862 TTAGTACTATGGCGTTCAACTTAAACGGTTTCAACTTCAACCAATCAGTTGTAGATTCAC 921 Query 171546 ACGGAAAGATTGT-ACCAACA--TGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGG 171602 | || ||| | ||||| |||| ||| | ||||| | || | | || |||| Sbjct 922 AAGG---TCGTGTAATCAACACTTGGGCTGATATCGTTAACCGTGCTGATTTAGGTATGG 978 Query 171603 AAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGCATCTGCTG-AGTCT 171661 |||| ||||| ||| | || || |||||||||||| |||| |||| || | || ||| | Sbjct 979 AAGTAATGCACGAACGTAACGCGCACAACTTCCCATTAGATTTAGCTTCAGGTGAAGTAT 1038 Query 171662 ACAACAGTTGCATTAACTGCACC 171684 | ||||||| ||||| || || Sbjct 1039 -TACCAGTTGCTTTAACAGCTCC 1060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570204388139040