Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1514 219 5e-52 seq324 87.8 2e-12 >seq1514 Length=8380 Score = 219 bits (242), Expect = 5e-52 Identities = 618/942 (66%), Gaps = 14/942 (1%) Strand=Plus/Minus Query 62916 GCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATA 62975 ||||| || | || | | | ||||| ||||| ||||| ||||| || | || || Sbjct 4069 GCTACTTCGTCAGGAGCAGTATATTCCATTATTTCAGTACAAAGGTTTGAGCTTTTTATG 4010 Query 62976 GTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGA 63035 || || | |||| ||| ||||| || ||| ||||| ||| | || ||| | || Sbjct 4009 GTGCCAAGGTTTTTTTGGTTACTTTTCGAGTTGGCTGCATCTTTAAATAGCATGTAGGGT 3950 Query 63036 GTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA 63095 || |||||||| || || ||| | || | ||| | | || | || |||| | Sbjct 3949 GTGCCAGTTTCCATTTGGCTTTCCAATATTTCAAACCATAAGTCTTGGGCTTTTACCGT- 3891 Query 63096 GATTT--GTA-TCTCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCC 63152 ||| ||| | | | |||||||||||| |||| || | ||| || | || || Sbjct 3890 --TTTACGTACTTTTCCTTCTCTTTCGTAACGTGTGTAAAGCTCTTCAAATGCCTCGCCA 3833 Query 63153 CAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCC 63212 | || | |||| || || ||||| | || ||||| | |||||| | ||| ||| Sbjct 3832 TAGCAATCGGCCAAGCCTGGGCATTCGTTGGGGCACATTAGCGACCAAACGTCGTTATCT 3773 Query 63213 TTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTA 63272 | ||| || |||||||| | |||||| ||||| | || ||| ||||| | | | Sbjct 3772 TCCACCCGCTTCATAAATAAATCAGGTATCCACATGGCGTAAAAAAGATCACGAGCACGC 3713 Query 63273 TGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCAC 63332 ||| || || || || || || | | | | | | | || ||| | |||||| Sbjct 3712 ATTTCTTCTTTACCGTGGTTTTTCTTCAATTGCAAAAGCTCAAAAACATCGGCATGCCAA 3653 Query 63333 GGTTCCAAGTATATGGCCA-TAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCT 63391 || ||||| |||||||| | | | || || | ||| ||||||||||||| || | Sbjct 3652 GGCTCCAAATATATGGCAAATGAGCCCTTGC-GCTTGCCACCTCCCTGATCTACATAGCG 3594 Query 63392 AGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACC 63451 |||||| | ||| | || | ||||||||| || || |||||||| | ||||| ||||| Sbjct 3593 AGCGGTATCATTGAATACCCGCAACATTGGTATTATGCCGTTTGAAGTGCCATTTGTACC 3534 Query 63452 GGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCAT 63511 ||||| ||| |||| | | |||| || ||| || || || || ||| Sbjct 3533 TTTTATATACGAACCAGTGGCCCTTACATTATGTATGCTTAGGCCAATACCACCCGCCGA 3474 Query 63512 TTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGAT 63571 || || ||| || ||| | ||||| || || || ||||| ||||| || || | Sbjct 3473 TTGTGATATTTTGGCACATTGCTTTAATGTATCGTAAATACCATCTATTGAGTCGTCTTT 3414 Query 63572 CATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT---AGTTCCCGCATTAAATAA 63628 |||| | || ||| ||| ||| | | || | | || || ||||| ||||| Sbjct 3413 CATGGT---TAATAAAAAGCATGACGATAGCTGTGGCTTTGGTGTACCTGCATTGAATAA 3357 Query 63629 GGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGA 63688 || |||| || || ||||||||| || ||||||| ||| || || ||||| || || Sbjct 3356 TGTGGGAGTGGCATGGGTAAACCATCGCTCTGAAAGTAAATTATAGGTTTCAATGGCCGA 3297 Query 63689 GTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63748 ||| ||||| |||||| ||||| || |||||||| | ||| ||||| || | ||| Sbjct 3296 GTCGATATCTATACCATGAATACCTACAGCTACACGCATGAGCATATGCTGTGGGCGTTC 3237 Query 63749 AACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATA 63808 | || || | ||||| || | || |||||||| | |||||||| |||||||| Sbjct 3236 TGCTATATTTCCATCAATTTTTAAAAGATATGATTTTTCGAGTGTTTTAAAGCCAAAATA 3177 Query 63809 GTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 63850 | || ||| |||| || || || ||| |||| ||| Sbjct 3176 ATCATAACCAAAATCTCTATCATATATTATAGTAGAGTCGAG 3135 >seq324 Length=1196970 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 80982 TTTCCAGACATTGTTGAATTCTGTGAGCGTATGGCAAACGAAGGAAAAATAGTTATAGTA 81041 |||||||||| ||| || || |||||| ||||| || | || ||| | ||| |||| Sbjct 298456 TTTCCAGACACTGTAGAGTTTTGTGAGTTGATGGCTGACCAGGGTAAAGTGGTTGTAGTG 298397 Query 81042 GCCGCACTCGATGGGACATTTCAACGTAAACCGTTTAATAATATTTTGAATCTTATTCCA 81101 || ||| | ||||| || | ||||| || ||| ||||| | | || |||| Sbjct 298396 GCTGCATTGGATGGTACCTACCAACGCCAAGGCTTTGGAAATATCCTTCAGCTGGTTCCT 298337 Query 81102 TTATCTGAAATGGTGGTAAAACTAACTGCTGTGTGTATGAAATGCTTT 81149 || | |||| |||| ||||| ||||| |||||||||||||||||| Sbjct 298336 TTGGCAGAAAGTGTGGAGAAACTTACTGCAGTGTGTATGAAATGCTTT 298289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622876838113760