Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq7200 140 2e-28 seq5201 140 2e-28 seq1296 134 9e-27 seq1210 131 1e-25 seq3132 104 2e-17 seq4935 98.7 7e-16 seq1246 89.7 3e-13 seq5381 84.2 1e-11 seq8258 82.4 5e-11 seq3771 82.4 5e-11 seq1887 82.4 5e-11 >seq7200 Length=70127 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 18986 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 18927 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 18926 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 18892 Score = 122 bits (134), Expect = 6e-23 Identities = 73/77 (95%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 6549 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCGT 6490 Query 20007 GGTAATATTTAGCCTTA 20023 || ||||||||||||| Sbjct 6489 GGCCATATTTAGCCTTA 6473 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 8925 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGA 8866 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||||||||| ||||| | |||||| Sbjct 8865 TAATCCATTCATGCGCGTCAGTAATTGGCTGACGA 8831 Score = 113 bits (124), Expect = 3e-20 Identities = 73/80 (91%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 19944 TTTCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCT 20003 || ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 16422 TTACTCTCTCTTCAAAGTACTTTTCAACTTTCCCTCACGGTACTTGTTTACTATCGGTCT 16363 Query 20004 CGCGGTAATATTTAGCCTTA 20023 || ||| |||||||||||| Sbjct 16362 CGTGGTTGTATTTAGCCTTA 16343 >seq5201 Length=125298 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 65427 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 65368 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 65367 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 65333 >seq1296 Length=6398 Score = 134 bits (148), Expect = 9e-27 Identities = 91/102 (89%), Gaps = 5/102 (5%) Strand=Plus/Plus Query 25895 TTATAATAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTA 25949 |||| ||||||||||||||| ||||||| ||||||||||||||||||||| |||| Sbjct 1376 TTATTCTAAGCCCGTTCCCTTAGCTGTGGGTTCGCTAGATAGTAGATAGGGACAGTGGTA 1435 Query 25950 ATCTCGTTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||| ||||||| |||||||||||||||||||||||||||| Sbjct 1436 ATCTCATTAATCCATTCATGCGCGTCACTAATTAGATGACGA 1477 Score = 91.5 bits (100), Expect = 1e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 19949 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGG 20008 |||| |||||||||||||||| |||||| || | |||||||||||||||||||||| || Sbjct 3440 CTCTTTTCAAAGTTCTTTTCATCTTTCCTTCGCAGTACTTGTTCGCTATCGGTCTCCCGT 3499 Query 20009 TAATATTTAGCCTTA 20023 ||||||||| ||| Sbjct 3500 GTATATTTAGCTTTA 3514 >seq1210 Length=14246 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||| ||||||||||||||||||||| || |||||| | Sbjct 4378 AAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCAT 4437 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 4438 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 4472 Score = 87.8 bits (96), Expect = 1e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTC 20004 |||||| ||||||||||||| || |||||||||||||||||||| ||||||||||||| Sbjct 6289 CTCTCTTTTCAAAGTTCTTTGCATCTTTCCCTCACGGTACTTGTACGCTATCGGTCTC 6346 >seq3132 Length=12859 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||| || ||||||| |||||||||||||||||||||||||||||||||| Sbjct 12219 CTCTCTCTTCAGGGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTT 12278 Query 20007 GGTAATATTTAGCCTTA 20023 | | ||||||||||||| Sbjct 12279 GCTTATATTTAGCCTTA 12295 Score = 100 bits (110), Expect = 2e-16 Identities = 80/95 (84%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG--GGTAA---TCTCGT 25956 ||||||||||||||||||||||||||||||||||||| ||||| || | ||| | Sbjct 1237 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAAGTAGGGACAGTGAAGGTCTAAT 1296 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||| |||||||||||||||| ||||||| Sbjct 1297 TGATCCATTCGTGCGCGTCACTAATTAAATGACGA 1331 >seq4935 Length=271464 Score = 98.7 bits (108), Expect = 7e-16 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 6174 AACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCC 6233 ||||| ||||| ||||| ||| | ||||| |||||||| ||||| | || ||| Sbjct 108824 AACGTCAATCGCAATGTCAGCGACCCCTTCTATCGCTACAAGATGCCCAGACTCATGGCC 108765 Query 6234 AAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCT 6293 || || ||||| |||||||| || || ||||| ||||||||||||||| |||||| || Sbjct 108764 AAAGTTGAGGGCAAGGGAAATGGCATCAAAACGGTCATTGTCAACATGGTTGAAGTTGCA 108705 Query 6294 AAGGCGCTC 6302 || || ||| Sbjct 108704 AAAGCTCTC 108696 >seq1246 Length=14010 Score = 89.7 bits (98), Expect = 3e-13 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 19960 GTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATATTTAGC 20019 || ||||||| |||||||||||||||||||||||||||||||||| | | | |||||||| Sbjct 11399 GTGCTTTTCACCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCAGGAGTATTTAGC 11340 Query 20020 CTTA 20023 |||| Sbjct 11339 CTTA 11336 >seq5381 Length=4748 Score = 84.2 bits (92), Expect = 1e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 19960 GTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATATTTAGC 20019 || ||||||| ||||||||||||||||| |||| ||||||||||| | ||| |||||||| Sbjct 2198 GTACTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGTCTCTCAGTAGTATTTAGC 2139 Query 20020 CTTA 20023 |||| Sbjct 2138 CTTA 2135 >seq8258 Length=2548 Score = 82.4 bits (90), Expect = 5e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 19960 GTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATATTTAGC 20019 |||||||||| |||||||||||||||||||||| ||||||||| | ||| |||||||| Sbjct 241 GTTCTTTTCACCTTTCCCTCACGGTACTTGTTCACTATCGGTCACAAAGTAGTATTTAGC 182 Query 20020 CTT 20022 ||| Sbjct 181 CTT 179 >seq3771 Length=2568 Score = 82.4 bits (90), Expect = 5e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 19963 CTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATATTTAGCCTT 20022 ||||||| ||||||||||||||||| |||| ||||||||||| | ||| ||||||||||| Sbjct 1910 CTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGTCTCTCAGTAGTATTTAGCCTT 1969 >seq1887 Length=9975 Score = 82.4 bits (90), Expect = 5e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 19960 GTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATATTTAGC 20019 |||||||||| ||||||||||||||||| |||| ||||||||| | |||| |||||||| Sbjct 4313 GTTCTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGTCACTAGGTAGTATTTAGC 4254 Query 20020 CTT 20022 ||| Sbjct 4253 CTT 4251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334910313520916