Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_008194.1 Length=74483 Score E Sequences producing significant alignments: (Bits) Value seq4979 250 1e-61 seq2001 161 5e-35 seq2100 96.9 2e-15 >seq4979 Length=1283317 Score = 250 bits (276), Expect = 1e-61 Identities = 550/824 (67%), Gaps = 3/824 (0%) Strand=Plus/Minus Query 65405 ACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGCCGGGTG 65464 ||||| || ||| | |||| || |||||| |||| || ||| | |||||||| Sbjct 188377 ACCGGTTCCCTCGGTTTGGATATTGCGCTGGGCGTCGGTGGCCTGCCGCGTGGCCGGGTT 188318 Query 65465 GTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTATGTCTCCACGCGGTGGCC 65524 || |||||||| || || ||||| || || ||| | || || || || || | || ||| Sbjct 188317 GTCGAAATCTATGGTCCGGAATCGTCCGGCAAGACCACGCTCTGCCTGCAGGTCGTCGCC 188258 Query 65525 AATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGACCCT 65584 | ||||||| ||| || || |||| || || || || || | || || || Sbjct 188257 GAAATGCAGAAGCTCGGCGGGGTTGCTGCCTTTATTGATGCCGAACATGCGCTCGATCCG 188198 Query 65585 GAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGGACACT 65644 | || ||| || ||||| || | ||| | |||| || | || ||||| || Sbjct 188197 CAATATGCCCAGAAACTCGGCGTCAATGTCGGCGACCTGCTGATCTCGCAACCGGATACC 188138 Query 65645 GGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTC 65704 ||||| ||||| || || |||| ||| | || || ||| || | | |||| | Sbjct 188137 GGCGAACAGGCGCTCGAAATCGCCGACATGCTGGTGCGGTCCGGGTCGGTCGACATCATT 188078 Query 65705 GTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGAC 65764 ||| ||||||| ||||| || || ||||| ||||| |||| ||||| || || ||| Sbjct 188077 GTCATTGACTCCGTGGCCGCGCTCACCCCGCGTGCCGAAATCGAGGGCGAGATGGGCGAC 188018 Query 65765 AGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACTGGCACC 65824 || || ||||| || ||||| ||| ||||| |||||||||| || | || | Sbjct 188017 CAGATGGTTGGGCTGCATGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTGACCGCCAAC 187958 Query 65825 ATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAAC 65884 ||| | ||||| |||||| ||| |||||||| | ||| ||||||||| | Sbjct 187957 ATCAAGAAGACCAATACGCTGGTTGTCTTCATCAACCAGATCCGCATGAAGATCGGTGTC 187898 Query 65885 GTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCA 65944 || | |||| || || |||||||| || ||||| || | | ||| ||||| || Sbjct 187897 ATG---TTCGGCTCGCCGGAAACCACCACCGGTGGCAATGCGCTCAAGTTTTACGCTTCG 187841 Query 65945 GTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAAC 66004 || ||| | || | || || |||| | | ||| | ||||| || | | |||||| | Sbjct 187840 GTGCGCCTCGACATTCGCCGTATCGGCGCGATCAAGAAGGGCGACGAAGTTATCGGCAGC 187781 Query 66005 CGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAACGCCGAGTTC 66064 ||| ||| |||||||||||||||||| | || || || |||| | ||| ||| Sbjct 187780 GAAACCAAGGTCAAGGTCGTCAAGAACAAGGTCGCGCCCCCCTTCCGCGAAGCCATCTTC 187721 Query 66065 TCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTGGCCGTGTCG 66124 | || | ||||| ||||| ||||| || ||| |||| || |||| ||| || || Sbjct 187720 GACATCCTCTACGGTGAGGGAATCTCCCGACAGGGCGAAGTCGTCGAAATGGGTGTCGCG 187661 Query 66125 CAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTACGGGGACAAGAACGTCGCTCAG 66184 || ||||| | || || || ||||||| | ||| || | |||| | | ||| Sbjct 187660 CACAAGCTGGTCGACAAATCAGGTGCCTGGTACGCCTACAAGGGCGAGAAAATTGGCCAG 187601 Query 66185 GGCAAGCCCAAGGCCGTCCAGTGGCTCAAGGCCAACCCGGACAT 66228 |||||| ||| ||| | ||| |||||||| |||| || || Sbjct 187600 GGCAAGGACAATGCCCGCGAGTTTCTCAAGGCACACCCAGAGAT 187557 >seq2001 Length=3286380 Score = 161 bits (178), Expect = 5e-35 Identities = 428/647 (66%), Gaps = 9/647 (1%) Strand=Plus/Plus Query 65421 TGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGCCGGGTGGTGGAAATCTACGGCC 65480 ||||| ||| || || ||||||| | ||| | || |||||| | || || | |||| Sbjct 2301338 TGGACATCGCGCTCGGAGTCGGGGGCTTGCCGCGCGGACGGGTGATTGAGATTTTTGGCC 2301397 Query 65481 CAGAATCTTCAGGGAAGTCAACTCTATGTCTCCACGCGGTGGCCAATGCGCAGAAGGCCG 65540 | || || || || ||| | || | ||||| | ||| | | |||||| ||| Sbjct 2301398 CGGAGTCGTCCGGCAAGACGACGATGACGCTCCATTGTATTGCCGAGGTTCAGAAGACCG 2301457 Query 65541 GTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGACCCTGAG-TACGCCAAGGCG 65599 | ||| || |||| |||||| || || || ||||||| ||| || ||| | | Sbjct 2301458 GCGGCGTGGCGGCCTTCATCGATGCGGAACATGCCCTGGATT-TGACCTATGCCCAAAAG 2301516 Query 65600 CTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTG 65659 || || ||| | || | | | ||| |||||||| || |||||||||||| || Sbjct 2301517 CTGGGAGTGCAGGCAGATGAGTTGCTTGTGTCCCAGCCGGATACCGGCGAGCAGGCCTTG 2301576 Query 65660 GAGATCGTTGACCTCCTCGTCA--AGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTG 65717 || |||| ||| || || ||| |||| | | || | |||| || || || | Sbjct 2301577 GAAATCGCTGAGACGCTGGTTCGCAGTGGAGCGATC-GACC-TGATCGTGGTGGATTCGG 2301634 Query 65718 TGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCC 65777 | || || || ||| || || || |||||||||| || || || ||| | ||| Sbjct 2301635 TCGCCGCGCTCACGCCACGGGCTGAAATCGAAGGCGAAATGGGCGATTCTCATATGGGCT 2301694 Query 65778 TGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACTGGCACCATCTCCAGCACCA 65837 |||| ||||| ||||||||||||||| |||| ||||| || | | ||||| | | Sbjct 2301695 TGCAGGCGCGGCTCATGTCGCAGGCCTTGCGTAAGCTGACGGCTGCTATCTCGAAGTCTC 2301754 Query 65838 ACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCC 65897 | ||| | | | |||||||| | ||| |||||| || ||| | |||| Sbjct 2301755 AGACGACATTGATTTTCATCAACCAGATCCGCATGAAGATTGG---GGTGATGTTCGGCA 2301811 Query 65898 CGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATG 65957 ||| ||||| || ||||| || || |||| |||||| |||| || ||| | ||| Sbjct 2301812 ATCCCGAAACCACGACCGGCGGGAATGCGTTGAAGTTCTATTCCTCGGTTCGCCTTGATA 2301871 Query 65958 TCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGA 66017 | || ||||||| | | || || || | || | | || ||||| ||||||| Sbjct 2301872 TTCGCCGCATCGAGTCTGTAAAAGAGGGGCAGGATGTGATGGGGAACCGGGTGCGGGTGA 2301931 Query 66018 AGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAACGCCGAGTTC 66064 |||||||||| |||||| |||| |||||| ||| | || |||||| Sbjct 2301932 AGGTCGTCAAAAACAAGATGGCGCCGCCGTTTCGCCAGGCGGAGTTC 2301978 >seq2100 Length=6174 Score = 96.9 bits (106), Expect = 2e-15 Identities = 184/271 (68%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 65400 TTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGCC 65459 || ||||||| || | | || ||| ||| ||||| | || || ||| | |||| Sbjct 289 TTTCCACCGGGTCCCTGGGGCTTGACATCGCCCTGGGAGTGGGCGGCCTGCCGCGCGGCC 230 Query 65460 GGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTATGTCTCCACGCGG 65519 | ||||| |||||||||||||| |||||||| || ||| | || || || || | | Sbjct 229 GCGTGGTCGAAATCTACGGCCCGGAATCTTCGGGCAAGACCACGCTCACGCTGCAGGTGA 170 Query 65520 TGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGG 65579 | ||| | ||| ||| ||| ||| ||||| |||||| || || ||| | || | Sbjct 169 TCGCCGAGATGCAAAAGCTCGGCGGCGTGTGCGCCTTCATCGATGCCGAACACGCGCTCG 110 Query 65580 ACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGG 65639 | | | ||||| | |||||| ||| |||| | |||| | | ||||| | Sbjct 109 ATACGCAATACGCGCAAAAGCTCGGCGTGAACCTGCAAGACCTGCTCATCAGCCAGCCCG 50 Query 65640 ACACTGGCGAGCAGGCCCTGGAGATCGTTGA 65670 |||| ||||||||||| ||||| ||||| || Sbjct 49 ACACCGGCGAGCAGGCACTGGAAATCGTCGA 19 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 238194565636624