Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1514 214 2e-50 seq324 100 4e-16 >seq1514 Length=8380 Score = 214 bits (236), Expect = 2e-50 Identities = 618/943 (66%), Gaps = 16/943 (2%) Strand=Plus/Minus Query 62771 GCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATG 62830 ||||| || | || | | | ||||| ||||| ||||| ||||| || | || ||| Sbjct 4069 GCTACTTCGTCAGGAGCAGTATATTCCATTATTTCAGTACAAAGGTTTGAGCTTTTTATG 4010 Query 62831 GTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGA 62890 || || | |||| ||| ||||| || ||| ||||| ||| | || ||| | || Sbjct 4009 GTGCCAAGGTTTTTTTGGTTACTTTTCGAGTTGGCTGCATCTTTAAATAGCATGTAGGGT 3950 Query 62891 GTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA 62950 || |||||||| || || ||| | || | ||| | | || | || |||| | Sbjct 3949 GTGCCAGTTTCCATTTGGCTTTCCAATATTTCAAACCATAAGTCTTGGGCTTTTACCGT- 3891 Query 62951 GATTT--GTATCTCTT--TTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCC 63006 ||| ||| || || |||||||||||| |||| || | ||| || | || || Sbjct 3890 --TTTACGTA-CTTTTCCTTCTCTTTCGTAACGTGTGTAAAGCTCTTCAAATGCCTCGCC 3834 Query 63007 CCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATC 63066 | || | ||| || || ||||| | || ||||| | |||||| | ||| ||| Sbjct 3833 ATAGCAATCGGCCAAGCCTGGGCATTCGTTGGGGCACATTAGCGACCAAACGTCGTTATC 3774 Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126 | ||| || |||||||| | |||||| ||||| | || ||| ||||| | | | Sbjct 3773 TTCCACCCGCTTCATAAATAAATCAGGTATCCACATGGCGTAAAAAAGATCACGAGCACG 3714 Query 63127 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63186 ||| || || || || || || | | | | | | | || ||| | |||||| Sbjct 3713 CATTTCTTCTTTACCGTGGTTTTTCTTCAATTGCAAAAGCTCAAAAACATCGGCATGCCA 3654 Query 63187 CGGTTCCAAGTATATGGCCA-TAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATC 63245 || ||||| |||||||| | | | || || | ||| ||||||||||||| || | Sbjct 3653 AGGCTCCAAATATATGGCAAATGAGCCCTTGC-GCTTGCCACCTCCCTGATCTACATAGC 3595 Query 63246 TAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCC 63305 |||||| | ||| | || | ||||||||| || || || || || || ||||| || | Sbjct 3594 GAGCGGTATCATTGAATACCCGCAACATTGGTATTATGCCGTTTGAAGTGCCATTTGTAC 3535 Query 63306 CTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCA 63365 || ||||| ||| |||| | | |||| || ||| || || || || ||| Sbjct 3534 CTTTTATATACGAACCAGTGGCCCTTACATTATGTATGCTTAGGCCAATACCACCCGCCG 3475 Query 63366 TTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCA 63425 || || ||| || ||| | ||||| ||||| || || || ||||| || || Sbjct 3474 ATTGTGATATTTTGGCACATTGCTTTAATGTATCGTAAATACCATCTATTGAGTCGTCTT 3415 Query 63426 TCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT---AGTTCCCGCATTAAATA 63482 ||||| | || ||| ||| ||| | | || | | || || ||||| |||| Sbjct 3414 TCATGGT---TAATAAAAAGCATGACGATAGCTGTGGCTTTGGTGTACCTGCATTGAATA 3358 Query 63483 AGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTG 63542 | || |||| || || ||||||||| || ||||||| ||| || || ||||| || | Sbjct 3357 ATGTGGGAGTGGCATGGGTAAACCATCGCTCTGAAAGTAAATTATAGGTTTCAATGGCCG 3298 Query 63543 AGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTT 63602 |||| ||||| |||||| ||||| || |||||||| | ||| ||||| || | || Sbjct 3297 AGTCGATATCTATACCATGAATACCTACAGCTACACGCATGAGCATATGCTGTGGGCGTT 3238 Query 63603 CAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAAT 63662 | | || || | ||||| || | || |||||||| | |||||||| ||||||| Sbjct 3237 CTGCTATATTTCCATCAATTTTTAAAAGATATGATTTTTCGAGTGTTTTAAAGCCAAAAT 3178 Query 63663 AGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 63705 | | || ||| |||| || || || ||| |||| ||| Sbjct 3177 AATCATAACCAAAATCTCTATCATATATTATAGTAGAGTCGAG 3135 >seq324 Length=1196970 Score = 100 bits (110), Expect = 4e-16 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 80811 TTTCCAGACATTGTTGAATTCTGTGAGCGTATGGCAAACGAAGGAAAAATAGTTATAGTA 80870 |||||||||| ||| || || |||||| ||||| || | || ||| | ||| |||| Sbjct 298456 TTTCCAGACACTGTAGAGTTTTGTGAGTTGATGGCTGACCAGGGTAAAGTGGTTGTAGTG 298397 Query 80871 GCCGCACTCGATGGTACATTTCAACGTAAACCGTTTAATAATATCTTGGATCTTATTCCA 80930 || ||| | |||||||| | ||||| || ||| |||||| | | || |||| Sbjct 298396 GCTGCATTGGATGGTACCTACCAACGCCAAGGCTTTGGAAATATCCTTCAGCTGGTTCCT 298337 Query 80931 TTATCTGAAATGGTGGTAAAACTAACTGCAGTGTGTATGAAATGCTTT 80978 || | |||| |||| ||||| |||||||||||||||||||||||| Sbjct 298336 TTGGCAGAAAGTGTGGAGAAACTTACTGCAGTGTGTATGAAATGCTTT 298289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633560431265600