Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq3957 96.9 3e-15 seq1112 82.4 7e-11 >seq3957 Length=668572 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || ||||| || || || || || |||| || | || || ||| | || Sbjct 478686 AATGCAGATCTTCGTAAAAACATTAACAGGGAAGACCATAACCTTAGAGGTTGAGCCTTC 478745 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| ||||| || ||| |||||||| || ||||||||||| || Sbjct 478746 AGACACAATCGATAATGTGAAGGCCAAGATCCAAGACAAAGAGGGCATTCCACCTGATCA 478805 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || || || |||||||| | || |||| |||||| || || ||||| Sbjct 478806 GCAGCGACTGATCTTCGCTGGCAAACAGCTTGAGGATGGTCGCACATTGTCAGACTACAA 478865 Query 25178 TATTCAAAAAG 25188 ||||| |||| Sbjct 478866 CATTCAGAAAG 478876 >seq1112 Length=3255245 Score = 82.4 bits (90), Expect = 7e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 25083 AAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAA 25142 |||||| ||||| ||||| || || || ||||| ||||| | || || || ||||| Sbjct 2620827 AAAATCCAGGACAAGGAAGGAATCCCCCCAGACCAGCAGCGCTTGATCTTCGCAGGCAAG 2620768 Query 25143 CAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACAT 25202 || | || |||| ||||| | ||| ||||||||||| || ||||| || || || Sbjct 2620767 CAGCTTGAGGATGGCCGCACCCTTTCCGACTACAATATTCAGAAGGAATCTACCCTTCAC 2620708 Query 25203 TTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || || || || ||||| |||| Sbjct 2620707 TTGGTTCTCAGACTGAGAGGTGGAA 2620683 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 25083 AAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAA 25142 |||||| ||||| ||||| || || || ||||| ||||| | || || || ||||| Sbjct 2623084 AAAATCCAGGACAAGGAAGGAATCCCCCCAGACCAGCAGCGCTTGATCTTCGCAGGCAAG 2623025 Query 25143 CAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACAT 25202 || | || |||| ||||| | || ||||||||||| || |||||||| || || Sbjct 2623024 CAGCTTGAGGATGGCCGCACACTCTCAGACTACAATATTCAGAAGGAATCCACCCTTCAC 2622965 Query 25203 TTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || || |||||||| Sbjct 2622964 TTGGTTCTCAGACTGAGAGGAGG 2622942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433280279212340