Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq8889 100 6e-16 seq4135 98.7 2e-15 seq1180 91.5 3e-13 seq303 89.7 1e-12 seq4979 87.8 4e-12 seq1476 87.8 4e-12 seq1913 86.0 1e-11 >seq8889 Length=568521 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| | ||||||||||||| | ||||||||||||||| Sbjct 296769 AGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAG 296710 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 296709 CCCCACGTTGGGC 296697 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| | ||||||||||||| | ||||||||||||||| Sbjct 307818 AGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAG 307759 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 307758 CCCCACGTTGGGC 307746 >seq4135 Length=160167 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||||||||||||| | |||||||||||||||| Sbjct 93299 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 93240 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 93239 CCCACGTTGGGC 93228 >seq1180 Length=857258 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 533365 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 533424 Query 142564 CCCACATCGGGCAGA 142578 ||||| | |||| || Sbjct 533425 CCCACGTTGGGCGGA 533439 >seq303 Length=27686 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142052 TGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 |||| |||||||||| |||| ||||||||||||||||||||||||||| ||||||||| Sbjct 21950 TGTCCCTGTGGCGCAGTGGATAGCGCGTTGGACTTCTAATCCAAAGGTCCCGGGTTCGAA 21891 Query 142112 CCCCGCCAGAGA 142123 |||| ||| || Sbjct 21890 TCCCGGCAGGGA 21879 >seq4979 Length=1283317 Score = 87.8 bits (96), Expect = 4e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 19710 GCACTCTTCCTTGGTCGCGGGCTCCATGCACCGGTTGCCTACGAAGGCGCCCTCAAGCTC 19769 || || ||||| || ||||| | ||| ||| | || ||||||||| ||||||||| Sbjct 624901 GCCCTGTTCCTCGGGCGCGGACGCCACTACCCGATCGCTCTCGAAGGCGCGCTCAAGCTC 624960 Query 19770 AAGGAGATCAGTTACATCCACGCAGAGGGTATTTCGGCAGGCGAACTTAAGCACGGGCCT 19829 ||||| || |||||||| || |||| | | ||||||||||||| |||||||| || Sbjct 624961 AAGGAAATTTCCTACATCCATGCCGAGGCTTATCCGGCAGGCGAACTGAAGCACGGCCCG 625020 Query 19830 CTTGCTCT 19837 || || || Sbjct 625021 CTGGCACT 625028 >seq1476 Length=13942 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 217822 AAAAACTCTGGTCTCTGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCCACGCTGGCA 217881 |||||| || || ||||| | |||||||| |||||||||||||| ||||||| Sbjct 7610 AAAAACGCTCATCGTTGCACGTTGATCCTGACTGAGGGAGACTCAGCCAAGTCGCTGGCT 7551 Query 217882 ACCGCTGGTCTTGCCGTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTCCGTGGTAAG 217941 |||| || | |||||||| || || || ||| |||||||||| || ||||| Sbjct 7550 GTGTCTGGCCTGGGGGTGGTGGGGCGCGACCACTACGGTGTCTTCCCCCTGCGCGGTAAA 7491 Query 217942 CTGCTCAACGTGCGCGATGCCTC 217964 ||||||||||| || || || || Sbjct 7490 CTGCTCAACGTCCGAGAAGCTTC 7468 >seq1913 Length=564963 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||| || |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 312461 GCCTGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 312520 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 312521 CCCACGTTGGGC 312532 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||| || |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 330898 GCCTGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 330957 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 330958 CCCACGTTGGGC 330969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027717803479276