Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq3878 230 4e-55 seq5144 210 4e-49 seq2001 174 3e-38 seq5997 132 9e-26 seq6557 127 4e-24 seq3957 120 6e-22 seq4135 87.8 3e-12 seq2446 87.8 3e-12 seq1435 87.8 3e-12 seq8889 86.0 1e-11 seq1112 86.0 1e-11 >seq3878 Length=2387 Score = 230 bits (254), Expect = 4e-55 Identities = 362/516 (70%), Gaps = 2/516 (0%) Strand=Plus/Plus Query 268283 GCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCCGAGGAACAGGCATTTCTGCTTGCCG 268342 || |||||||| |||||||| ||||| | ||| || |||||||||||||||||| |||| Sbjct 131 GCGTGGCCCCAGTCGCGCTTGGCGTCGAGGTTGCCCAGGAACAGGCATTTCTGCGTGCCC 190 Query 268343 AGCTTCACGCGTGCAAGACCGCGAGTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGA 268402 || | | ||| || | |||| ||||| || || || ||||| || ||||| || | Sbjct 191 AGGTGAATGCGGGCCAAGGCGCGGGTGATCTTGCGCGTGACGAAGGTTTCGCCGCGGATT 250 Query 268403 GGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGCGAACATGCCATATGCCTCACGGTAG 268462 || || |||||||| | |||||||||||| || ||||||| || ||||| |||||| Sbjct 251 GGCGATTCATGGTTGAACAAGATGCCGTTGCAGGCATACATGCCGTAAGCCTCGCGGTAG 310 Query 268463 TTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGCGTACGGAGAACGTGGATGGAAG 268522 ||||| ||||||| || ||||||| || || || || || || || | ||| Sbjct 311 TTCACCGTGATCCAGTAGCCATACATCTTGGCCACGGCATAGGGGCTGCGCGGGTAAAAG 370 Query 268523 GGCGTCGTGATCTTTTGAGGGATTTCTCGGACTTTGCCAAAGAGCTCGGAGGTCGATGCT 268582 ||||| || || || | ||| | || ||| ||||||||||||| || ||| Sbjct 371 GGCGTGGTCTCGCGCTGCGGCACTTCCTGCACCAGGCCGTAGAGCTCGGAGGTGGAGGCT 430 Query 268583 TGGTAGAACTTTGTTGT-TTTTTCGAGACCGCAGATTCGGATTGCCTCGAGCAAACGAAG 268641 || || ||| | ||| || | | ||| ||| || | || ||||||| || || Sbjct 431 TGATAAAAC-CGGCTGTGCTTGGCCATGCCGGTGATGCGCAGGGCTTCGAGCATTCGCAG 489 Query 268642 AGTTCCCATGCCATCCACGTCCGCTGTATACTCCGGCATCTCGAATGACACCTGGACATG 268701 |||| |||||| | || || || || || ||||| ||||| ||||| Sbjct 490 CACGCCCACGCCATCGGAATTGGCGGTGTATTCAGGTTCTTCGAACGACACGGCCACATG 549 Query 268702 GCTCTGGGCGCCCAGGTTATAAACCTCATCCGGTTTGACCTGCTGCACGATCTTCACGAG 268761 ||| || || ||||||| ||||||||||| || ||| |||||| |||||| || || Sbjct 550 GCTTTGCGCCGCCAGGTTGTAAACCTCATCTGGCTTGGCCTGCTCCACGATGCGCAGCAG 609 Query 268762 GTTCGTTGAGTCGGTGAGGTCTCCGTAGTGCAACAC 268797 | | | || ||||| | ||| |||||||||| ||| Sbjct 610 GCTGCTGGAATCGGTCATGTCGCCGTAGTGCAGCAC 645 >seq5144 Length=4231 Score = 210 bits (232), Expect = 4e-49 Identities = 241/324 (74%), Gaps = 0/324 (0%) Strand=Plus/Plus Query 268247 TGGAGCATTTTCCACATTGCTTCGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCG 268306 || ||||| |||| ||||| || ||||| ||||||||||||||||||||||| ||| Sbjct 1331 TGCAGCATCAGCCACTGCGCTTCAACGTAGTCACGCGCATGGCCCCAATCGCGCTTGGCG 1390 Query 268307 TCCATGTTCCCGAGGAACAGGCATTTCTGCTTGCCGAGCTTCACGCGTGCAAGACCGCGA 268366 || ||| || ||| ||||||| | ||| |||| | | ||| || | |||| Sbjct 1391 CTCAGGTTGCCCAGGTACAGGCAGTCTTGCAGGCCGTGGGCGATGCGCGCCACGGCGCGG 1450 Query 268367 GTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATG 268426 ||||| || || |||||||||||||||||||| || ||||| ||||||||||| |||||| Sbjct 1451 GTGATCTTGCGCGTCACGAACGTCTCGCCACGCAGCGGGCTTTCGTGGTTGAACAGGATG 1510 Query 268427 CCGTTGCACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAAC 268486 |||||||| || ||| |||||| ||||| ||||| ||||| ||||||| || || Sbjct 1511 CCGTTGCAGGCATACAGGCCATAGGCCTCGCGGTAATTCACCGTGATCCAGTAGCCATAC 1570 Query 268487 ATCTTTGCAACTGCGTACGGAGAACGTGGATGGAAGGGCGTCGTGATCTTTTGAGGGATT 268546 | ||| || || ||||| || || || | ||||||||| || ||| || || ||| Sbjct 1571 AGCTTGGCCACGGCGTAGGGGCTGCGCGGGTAGAAGGGCGTGGTTTCCTTCTGCGGAATT 1630 Query 268547 TCTCGGACTTTGCCAAAGAGCTCG 268570 || | || |||| | |||||| Sbjct 1631 TCCTGCACCAGGCCATACAGCTCG 1654 >seq2001 Length=3286380 Score = 174 bits (192), Expect = 3e-38 Identities = 354/526 (67%), Gaps = 6/526 (1%) Strand=Plus/Plus Query 268209 CCCCAGTTGCAATCACAAAGTCCTCTGGCTCAGGAGACTGGAGCATTTTCCACATTGCTT 268268 ||||||| || | ||| |||| || |||| | ||| ||||| ||||||| |||| Sbjct 2680195 CCCCAGTCGCCACAACATAGTCATCCGGCTTGTCGGCCTGTAGCATCATCCACATCGCTT 2680254 Query 268269 CGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCCGAGGAACAGGC 268328 ||| |||||| | || |||||| |||||||| || || | ||| |||||||| || Sbjct 2680255 CGATATAGTCGCCAGCGAAGCCCCAGTCGCGCTTGGCATCGAGGTTACCGAGGAAGAGAT 2680314 Query 268329 ATTTCTGCTTGCCGAGCTTCACGCGTGCAAGACCGCGAGTGATTTTTCGGGTCACGAACG 268388 ||||| |||| ||||| | ||| ||| | | | ||||| || ||||||||||||| Sbjct 2680315 CCTTCTGGATGCCCAGCTTGATGCGCGCAGCAGCCTGGGTGATCTTGCGGGTCACGAACG 2680374 Query 268389 TCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGCGAACATGCCAT 268448 | ||||| || | || ||| || |||||||| || |||||||| || |||| || Sbjct 2680375 TTTCGCCGCGCCGCGGCGACTCATGATTGAAGAGAATACCGTTGCAGGCAAACAGATTAT 2680434 Query 268449 ATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGCGTACGGAG 268508 | || || ||||||||||| ||||||| ||| | | ||| || | |||| || Sbjct 2680435 AGGCTTCCCGGTAGTTCACCGTGATCCAGTAGGCATAGACCTTCGCTGCGCCGTAGGGGC 2680494 Query 268509 AACGTGGATGGAAGGGCGTCGTGATCTTTTGAGGGATTTCTCGGACTTTGCCAAAGAGCT 268568 || |||| || || || || | ||| || | ||| |||||||| | | | Sbjct 2680495 TGCGAGGATAAAACGGAGTGGTTTCCCGTTGTGGCACTTCCAACACTTTGCCGTACATTT 2680554 Query 268569 CGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTTTTCGAGACCGCAGATTCGGATTGCCT 268628 || | || || |||||||| || | || || || | ||||| || | Sbjct 2680555 CGCTCGATGAGGCCTGGTAGAATTTCGGCGT------CAGTCCCGACTCACGGATGGCTT 2680608 Query 268629 CGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCCGGCATCTCGAATG 268688 | | | ||||| || |||| ||| || ||||| || || ||||| || ||||| Sbjct 2680609 CCAAGAGACGAATAGCGCCCAGGCCGGTGACATCCGCCGTGTATTCCGGAATATCGAAAC 2680668 Query 268689 ACACCTGGACATGGCTCTGGGCGCCCAGGTTATAAACCTCATCCGG 268734 ||| | || |||||||| || || || || || | |||||| || Sbjct 2680669 TCACACGCACGTGGCTCTGCGCCCCGAGATTGTAGATCTCATCGGG 2680714 >seq5997 Length=2409 Score = 132 bits (146), Expect = 9e-26 Identities = 154/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 94807 TCAGGTTGTAATTATCCCCAGGCCCCGCCAGGTTCGTGGGCATCACAGATACGAAGTCGC 94866 |||||| ||| || || || || || ||| ||||||||||| ||| | | || Sbjct 1699 TCAGGTCGTAGTTGTCGTTCGGGCCGTACATGTTGGTGGGCATCACGCTCACGTACTGGC 1640 Query 94867 ACCCGTAATCTCGTTTGTATGCATCGCACATCTCGATGCCCGCTATCTTCGCGACCGCGT 94926 |||| | || ||||| || ||||||||| | | |||||| |||||||| | ||||| Sbjct 1639 GACCGTGCTGGCGGTTGTAGGCCTCGCACATCGCCACGCCCGCAATCTTCGCCAGCGCGT 1580 Query 94927 ACGGCTTGTTGGTGTCTTCCAGAGGACCCGACAGGAGGTACTCTTCGCGTATCGGCTGTG 94986 | ||| |||||| |||||||| || |||| ||| ||||| || ||||| |||||||| | Sbjct 1579 AGGGCGCGTTGGTTTCTTCCAGCGGGCCCGTCAGCAGGTAGTCCTCGCGAATCGGCTGCG 1520 Query 94987 GACAGTCCCTTGGGTAGATACAACTGCT 95014 | |||| | |||||||| || ||||| Sbjct 1519 GGCAGTTGCGCGGGTAGATGCAGCTGCT 1492 >seq6557 Length=877522 Score = 127 bits (140), Expect = 4e-24 Identities = 297/439 (68%), Gaps = 18/439 (4%) Strand=Plus/Plus Query 186006 TGTTCGATGTCACGATGGCGCCAATCATGGTCTGTGGAATGCCCTCGAAGTTTGCGAGCA 186065 ||||||| | ||||| || |||| | |||| || | | | | | || ||||||| Sbjct 504448 TGTTCGAGGCGACGATTGCATGGATCAGGTTCTGCGGCACGTCGCGGTAATTGGCGAGCA 504507 Query 186066 GCTGCTTCGTGTCCTTGGGGAAGCAGTAGCCGCCGTAGCCGAAGCTCGG---GTTGCAAT 186122 |||||| ||||||||||| | |||||||||||||||||||| ||| |||| ||| Sbjct 504508 ACTGCTTGGTGTCCTTGGGCAGACAGTAGCCGCCGTAGCCGAACGACGGATTGTTGTAAT 504567 Query 186123 AGCCTCCGCCAATACGTGGCTCGTGCGTGATGCCCTCGATGATGTCCTTTGCATTCAGAC 186182 | ||| || ||||| ||| | ||| || |||||||| | | || ||| | Sbjct 504568 GG---TTGCCGATGCGTGGGTCGAGGCTGACCCCGTCGATGATCTGGCGCGTATCCAGCC 504624 Query 186183 CATTCACCATTGCAAACGAGTCGAGCTCATTGAAAAACGACACGCGCATCGCGAGGTACG 186242 | | | | || | | || ||||| |||||| | | ||||||| || ||| | | Sbjct 504625 CGTGCGACTCGGCGTAGGTATCCAGCTCGTTGAAATAGGCGACGCGCAAGGCCAGGAAAG 504684 Query 186243 TATTCGCAAACAACTTGA-CGCTCTCTGCCTCGCGTGTTGACATGAACAGCTTTGGCACA 186301 |||| ||||||| ||||| ||| ||| |||||| | | | |||||| |||||| Sbjct 504685 TATTGGCAAACAGCTTGATCGC-CTCGGCCTCGGTAGCTTCTGTAAACAGCACCGGCACA 504743 Query 186302 TCCTTGATGAGAG---ACTCGCGGCCGAGCATCTCTACGAATGCAGTGGCGTTTTCGCC- 186357 |||||| | | |||||| | || || |||| | ||| |||| Sbjct 504744 TCCTTGCGCACTGCGCCCTCGCG---CAACAGTTCGGCGAA--GACCCGCGCCCGCGCCG 504798 Query 186358 TTCG-TCGCCAATGATGATGCGAGAGGGGTGGAGGTTGTCGTAGAGTGCACGACCCTCGC 186416 || ||||| | ||||||||| || || |||||||||||||| | || | || |||| Sbjct 504799 AGCGCTCGCCGACGATGATGCGCGACGGATGGAGGTTGTCGTACAACGCCCTGCCTTCGC 504858 Query 186417 GCAGGAACTCCGGGGAGAA 186435 ||||||||||||| || || Sbjct 504859 GCAGGAACTCCGGCGAAAA 504877 >seq3957 Length=668572 Score = 120 bits (132), Expect = 6e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 68272 CTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATA 68331 |||| || ||||| || || || | ||| | ||||| || | ||| || || ||||| | Sbjct 478876 CTTTCTGAATGTTGTAGTCTGACAATGTGCGACCATCCTCAAGCTGTTTGCCAGCGAAGA 478817 Query 68332 TGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCT 68391 | |||| || || || ||||||||||| || |||||||| ||||| ||||| || | Sbjct 478816 TCAGTCGCTGCTGATCAGGTGGAATGCCCTCTTTGTCTTGGATCTTGGCCTTCACATTAT 478757 Query 68392 CGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 |||| ||||||| | || || || ||||| ||||| || || || | || || |||| Sbjct 478756 CGATTGTGTCTGAAGGCTCAACCTCTAAGGTTATGGTCTTCCCTGTTAATGTTTTTACGA 478697 Query 68452 ATATCTGCATTATG 68465 | ||||||||| || Sbjct 478696 AGATCTGCATTTTG 478683 >seq4135 Length=160167 Score = 87.8 bits (96), Expect = 3e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 84455 CGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 84514 ||||||| |||||||||||| ||||| | || ||||||| || | ||||||||||||||| Sbjct 93300 CGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAG 93241 Query 84515 CCCCACATCGGGC 84527 |||||| | |||| Sbjct 93240 CCCCACGTTGGGC 93228 >seq2446 Length=1160753 Score = 87.8 bits (96), Expect = 3e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || || || ||||| || ||||||||||| ||| Sbjct 439688 CCACCACGGAGCCGGAGGACAAGGTGAAGGGTCGATTCTTTCTGAATGTTATAATCTGAG 439629 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | ||||| || | |||||| || || || || || | ||||||||| || ||| Sbjct 439628 AGTGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAAATCAGCCGTTGTTGGTCAGGGGGA 439569 Query 68355 ATGCCT 68360 |||||| Sbjct 439568 ATGCCT 439563 >seq1435 Length=849219 Score = 87.8 bits (96), Expect = 3e-12 Identities = 143/202 (71%), Gaps = 3/202 (1%) Strand=Plus/Plus Query 268502 TACGGAGAACGTGGATGGAAGGGCGTCGTGATCTTT-TGAGGGATTTCTCGGACTTTGCC 268560 || || ||||| || | ||| || || || ||||| || || ||||| ||||||||| Sbjct 332725 TATGGTGAACGAGGGTAGAATGGTGTAGTT-TCTTTCTGTGGAATTTCAACGACTTTGCC 332783 Query 268561 AAAGAGCTCGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTTTTCGAGACCGCAGATTCG 268620 | | || || || |||||||||||||| || |||||| ||||| | | | || Sbjct 332784 GTACAATTCTGATGTGGATGCTTGGTAGAATTTCACATCTTTTTCAAGACCACTGGTACG 332843 Query 268621 GATTGCCTCGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCCGGCAT 268680 ||| || ||||||| | | || |||| | | ||||| || |||||||| || || Sbjct 332844 GATAGCATCGAGCAGTCTCAATGTCCCCAGGGCGTCCACTTCTGCTGTATATTCACTCAA 332903 Query 268681 CTCGAATGACACCT-GGACATG 268701 ||| ||||| |||| ||| ||| Sbjct 332904 CTCAAATGAAACCTAGGAAATG 332925 >seq8889 Length=568521 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 |||||| |||||||||||| ||||| | || ||||||| || | |||||||||||||||| Sbjct 296768 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 296709 Query 84516 CCCACATCGGGC 84527 ||||| | |||| Sbjct 296708 CCCACGTTGGGC 296697 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 |||||| |||||||||||| ||||| | || ||||||| || | |||||||||||||||| Sbjct 307817 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 307758 Query 84516 CCCACATCGGGC 84527 ||||| | |||| Sbjct 307757 CCCACGTTGGGC 307746 >seq1112 Length=3255245 Score = 86.0 bits (94), Expect = 1e-11 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || ||||| || || || || || || || |||||||| | ||||| || Sbjct 2622960 ACCAAGTGAAGGGTGGATTCCTTCTGAATATTGTAGTCTGAGAGTGTGCGGCCATCCTCA 2623019 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || ||||| || | | || ||||| || || || ||||||||||| || Sbjct 2623020 AGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCTGGGGGGATTCCTTCCTTGTCCTGG 2623079 Query 68373 ATCTTTGCCT 68382 || || |||| Sbjct 2623080 ATTTTAGCCT 2623089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921518302749920