Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq5144 107 5e-18 seq3957 89.7 1e-12 >seq5144 Length=4231 Score = 107 bits (118), Expect = 5e-18 Identities = 221/329 (67%), Gaps = 0/329 (0%) Strand=Plus/Minus Query 72432 GAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACTCCGTTTTATCCTCGA 72491 ||| ||||||| ||||| |||||||| |||| ||||| || || || || || || Sbjct 1653 GAGCTGTATGGCCTGGTGCAGGAAATTCCGCAGAAGGAAACCACGCCCTTCTACCCGCGC 1594 Query 72492 AGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAAAATTACCGTGAGTCG 72551 ||||| |||| || || ||| |||| | || |||||| |||||||| ||| | Sbjct 1593 AGCCCCTACGCCGTGGCCAAGCTGTATGGCTACTGGATCACGGTGAATTACCGCGAGGCC 1534 Query 72552 TATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAGTCCCAACAGAGGCCAT 72611 ||| | |||||| |||||| || ||||| ||||| || || | ||| | Sbjct 1533 TATGGCCTGTATGCCTGCAACGGCATCCTGTTCAACCACGAAAGCCCGCTGCGTGGCGAG 1474 Query 72612 CAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTTTCAATGGTGTCGAAAAA 72671 ||||||||| || || ||||| | || ||| || | | || | || | Sbjct 1473 ACGTTCGTGACGCGCAAGATCACCCGCGCCGTGGCGCGCATCGCCCACGGCCTGCAAGAC 1414 Query 72672 TGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGATTACGTA 72731 ||| |||| || || || | ||||| | |||||||| ||||| || ||||| Sbjct 1413 TGCCTGTACCTGGGCAACCTGAGCGCCAAGCGCGATTGGGGCCATGCGCGTGACTACGTT 1354 Query 72732 GAAGCAATGTGGTTGATGCTGCAACAAGA 72760 ||||| |||| |||||||||||||||| Sbjct 1353 GAAGCGCAGTGGCTGATGCTGCAACAAGA 1325 >seq3957 Length=668572 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 |||| || || || ||||| | | ||||| || || || | ||||| || ||||||| Sbjct 478876 CTTTCTGAATGTTGTAGTCTGACAATGTGCGACCATCCTCAAGCTGTTTGCCAGCGAAGA 478817 Query 288344 TCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTT 288403 |||| ||||| ||| | ||| || || ||||| || ||||| || || ||||| || | Sbjct 478816 TCAGTCGCTGCTGATCAGGTGGAATGCCCTCTTTGTCTTGGATCTTGGCCTTCACATTAT 478757 Query 288404 CTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 | || | || | || || || | || || |||||||| || | || || |||| Sbjct 478756 CGATTGTGTCTGAAGGCTCAACCTCTAAGGTTATGGTCTTCCCTGTTAATGTTTTTACGA 478697 Query 288464 ATATCTGCATTATG 288477 | ||||||||| || Sbjct 478696 AGATCTGCATTTTG 478683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179517826986408