Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq3957 114 1e-20 seq2446 96.9 3e-15 seq1112 91.5 1e-13 >seq3957 Length=668572 Score = 114 bits (126), Expect = 1e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 64254 CTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAA 64313 |||| ||||||||||| |||| | ||||| | || |||||||| ||||| || | | Sbjct 478876 CTTTCTGAATGTTGTAGTCTGACAATGTGCGACCATCCTCAAGCTGTTTGCCAGCGAAGA 478817 Query 64314 TGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCT 64373 | || |||||||| || || ||||| || ||||| ||||| || || ||| ||| | Sbjct 478816 TCAGTCGCTGCTGATCAGGTGGAATGCCCTCTTTGTCTTGGATCTTGGCCTTCACATTAT 478757 Query 64374 CCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433 | | ||| || | || || |||| |||| |||||| || || || |||||||||| Sbjct 478756 CGATTGTGTCTGAAGGCTCAACCTCTAAGGTTATGGTCTTCCCTGTTAATGTTTTTACGA 478697 Query 64434 AAATTTGCATTTT 64446 | || |||||||| Sbjct 478696 AGATCTGCATTTT 478684 >seq2446 Length=1160753 Score = 96.9 bits (106), Expect = 3e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| ||||||||||| |||||||| ||||||| || ||||| | || Sbjct 439673 AGGACAAGGTGAAGGGTCGATTCTTTCTGAATGTTATAATCTGAGAGTGTGCGGCCATCC 439614 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCT 64342 || ||||||||||| ||| |||| ||||| || ||||| || ||||| ||| Sbjct 439613 TCGAGCTGCTTGCCAGCAAAAATCAGCCGTTGTTGGTCAGGGGGAATGCCT 439563 >seq1112 Length=3255245 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || | || ||| || || | |||| || ||||| || ||||| ||||| |||| | Sbjct 2622942 CCTCCTCTCAGTCTGAGAACCAAGTGAAGGGTGGATTCCTTCTGAATATTGTAGTCTGAG 2623001 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || |||||||||||||| || | || | ||||||||||| || || Sbjct 2623002 AGTGTGCGGCCATCCTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCTGGGGGG 2623061 Query 64337 ATTCCTTCTTTTTCTTGTATTTT 64359 |||||||| || || || ||||| Sbjct 2623062 ATTCCTTCCTTGTCCTGGATTTT 2623084 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || | || ||| || || | |||| || ||||| || ||||| ||||| || | Sbjct 2620685 CCACCTCTCAGTCTGAGAACCAAGTGAAGGGTAGATTCCTTCTGAATATTGTAGTCGGAA 2620744 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| | || |||||||||||||| || | || | ||||||||||| || || Sbjct 2620745 AGGGTGCGGCCATCCTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCTGGGGGG 2620804 Query 64337 ATTCCTTCTTTTTCTTGTATTTT 64359 |||||||| || || || ||||| Sbjct 2620805 ATTCCTTCCTTGTCCTGGATTTT 2620827 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315 || |||||||| || |||| || ||||||| | || |||||||||||||| || | || Sbjct 2620093 TTCTGAATGTTATAGTCTGAGAGGGTGCGCCCATCCTCAAGCTGCTTGCCTGCGAAGATC 2620152 Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 | ||||| ||||| || || |||||||| || || || ||||| Sbjct 2620153 AAGCGCTGTTGGTCTGGGGGGATTCCTTCCTTGTCCTGGATTTT 2620196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499588365119840