Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_011055.1 Length=76312 Score E Sequences producing significant alignments: (Bits) Value seq4979 250 1e-61 seq2001 165 4e-36 seq2100 96.9 2e-15 >seq4979 Length=1283317 Score = 250 bits (276), Expect = 1e-61 Identities = 550/824 (67%), Gaps = 3/824 (0%) Strand=Plus/Minus Query 65086 ACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGCCGGGTG 65145 ||||| || ||| | |||| || |||||| |||| || ||| | |||||||| Sbjct 188377 ACCGGTTCCCTCGGTTTGGATATTGCGCTGGGCGTCGGTGGCCTGCCGCGTGGCCGGGTT 188318 Query 65146 GTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTGGCC 65205 || |||||||| || || ||||| || || ||| | || || || || || | || ||| Sbjct 188317 GTCGAAATCTATGGTCCGGAATCGTCCGGCAAGACCACGCTCTGCCTGCAGGTCGTCGCC 188258 Query 65206 AATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGACCCT 65265 | ||||||| ||| || || |||| || || || || || | || || || Sbjct 188257 GAAATGCAGAAGCTCGGCGGGGTTGCTGCCTTTATTGATGCCGAACATGCGCTCGATCCG 188198 Query 65266 GAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGGACACT 65325 | || ||| || ||||| || | ||| | |||| || | || ||||| || Sbjct 188197 CAATATGCCCAGAAACTCGGCGTCAATGTCGGCGACCTGCTGATCTCGCAACCGGATACC 188138 Query 65326 GGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTC 65385 ||||| ||||| || || |||| ||| | || || ||| || | | |||| | Sbjct 188137 GGCGAACAGGCGCTCGAAATCGCCGACATGCTGGTGCGGTCCGGGTCGGTCGACATCATT 188078 Query 65386 GTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGAC 65445 ||| ||||||| ||||| || || ||||| ||||| |||| ||||| || || ||| Sbjct 188077 GTCATTGACTCCGTGGCCGCGCTCACCCCGCGTGCCGAAATCGAGGGCGAGATGGGCGAC 188018 Query 65446 AGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACTGGCACC 65505 || || ||||| || ||||| ||| ||||| |||||||||| || | || | Sbjct 188017 CAGATGGTTGGGCTGCATGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTGACCGCCAAC 187958 Query 65506 ATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAAC 65565 ||| | ||||| |||||| ||| |||||||| | ||| ||||||||| | Sbjct 187957 ATCAAGAAGACCAATACGCTGGTTGTCTTCATCAACCAGATCCGCATGAAGATCGGTGTC 187898 Query 65566 GTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCA 65625 || | |||| || || |||||||| || ||||| || | | ||| ||||| || Sbjct 187897 ATG---TTCGGCTCGCCGGAAACCACCACCGGTGGCAATGCGCTCAAGTTTTACGCTTCG 187841 Query 65626 GTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAAC 65685 || ||| | || | || || |||| | | ||| | ||||| || | | |||||| | Sbjct 187840 GTGCGCCTCGACATTCGCCGTATCGGCGCGATCAAGAAGGGCGACGAAGTTATCGGCAGC 187781 Query 65686 CGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAACGCCGAGTTC 65745 ||| ||| |||||||||||||||||| | || || || |||| | ||| ||| Sbjct 187780 GAAACCAAGGTCAAGGTCGTCAAGAACAAGGTCGCGCCCCCCTTCCGCGAAGCCATCTTC 187721 Query 65746 TCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTGGCCGTGTCG 65805 | || | ||||| ||||| ||||| || ||| |||| || |||| ||| || || Sbjct 187720 GACATCCTCTACGGTGAGGGAATCTCCCGACAGGGCGAAGTCGTCGAAATGGGTGTCGCG 187661 Query 65806 CAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTACGGGGACAAGAACGTCGCTCAG 65865 || ||||| | || || || ||||||| | ||| || | |||| | | ||| Sbjct 187660 CACAAGCTGGTCGACAAATCAGGTGCCTGGTACGCCTACAAGGGCGAGAAAATTGGCCAG 187601 Query 65866 GGCAAGCCCAAGGCCGTCCAGTGGCTCAAGGCCAACCCGGACAT 65909 |||||| ||| ||| | ||| |||||||| |||| || || Sbjct 187600 GGCAAGGACAATGCCCGCGAGTTTCTCAAGGCACACCCAGAGAT 187557 >seq2001 Length=3286380 Score = 165 bits (182), Expect = 4e-36 Identities = 429/647 (66%), Gaps = 9/647 (1%) Strand=Plus/Plus Query 65102 TGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGCCGGGTGGTGGAAATCTACGGCC 65161 ||||| ||| || || ||||||| | ||| | || |||||| | || || | |||| Sbjct 2301338 TGGACATCGCGCTCGGAGTCGGGGGCTTGCCGCGCGGACGGGTGATTGAGATTTTTGGCC 2301397 Query 65162 CAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTGGCCAATGCGCAGAAGGCCG 65221 | || || || || ||| | || || ||||| | ||| | | |||||| ||| Sbjct 2301398 CGGAGTCGTCCGGCAAGACGACGATGACGCTCCATTGTATTGCCGAGGTTCAGAAGACCG 2301457 Query 65222 GTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGACCCTGAG-TACGCCAAGGCG 65280 | ||| || |||| |||||| || || || ||||||| ||| || ||| | | Sbjct 2301458 GCGGCGTGGCGGCCTTCATCGATGCGGAACATGCCCTGGATT-TGACCTATGCCCAAAAG 2301516 Query 65281 CTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTG 65340 || || ||| | || | | | ||| |||||||| || |||||||||||| || Sbjct 2301517 CTGGGAGTGCAGGCAGATGAGTTGCTTGTGTCCCAGCCGGATACCGGCGAGCAGGCCTTG 2301576 Query 65341 GAGATCGTTGACCTCCTCGTCA--AGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTG 65398 || |||| ||| || || ||| |||| | | || | |||| || || || | Sbjct 2301577 GAAATCGCTGAGACGCTGGTTCGCAGTGGAGCGATC-GACC-TGATCGTGGTGGATTCGG 2301634 Query 65399 TGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCC 65458 | || || || ||| || || || |||||||||| || || || ||| | ||| Sbjct 2301635 TCGCCGCGCTCACGCCACGGGCTGAAATCGAAGGCGAAATGGGCGATTCTCATATGGGCT 2301694 Query 65459 TGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACTGGCACCATCTCCAGCACCA 65518 |||| ||||| ||||||||||||||| |||| ||||| || | | ||||| | | Sbjct 2301695 TGCAGGCGCGGCTCATGTCGCAGGCCTTGCGTAAGCTGACGGCTGCTATCTCGAAGTCTC 2301754 Query 65519 ACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCC 65578 | ||| | | | |||||||| | ||| |||||| || ||| | |||| Sbjct 2301755 AGACGACATTGATTTTCATCAACCAGATCCGCATGAAGATTGG---GGTGATGTTCGGCA 2301811 Query 65579 CGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATG 65638 ||| ||||| || ||||| || || |||| |||||| |||| || ||| | ||| Sbjct 2301812 ATCCCGAAACCACGACCGGCGGGAATGCGTTGAAGTTCTATTCCTCGGTTCGCCTTGATA 2301871 Query 65639 TCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGA 65698 | || ||||||| | | || || || | || | | || ||||| ||||||| Sbjct 2301872 TTCGCCGCATCGAGTCTGTAAAAGAGGGGCAGGATGTGATGGGGAACCGGGTGCGGGTGA 2301931 Query 65699 AGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAACGCCGAGTTC 65745 |||||||||| |||||| |||| |||||| ||| | || |||||| Sbjct 2301932 AGGTCGTCAAAAACAAGATGGCGCCGCCGTTTCGCCAGGCGGAGTTC 2301978 >seq2100 Length=6174 Score = 96.9 bits (106), Expect = 2e-15 Identities = 184/271 (68%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 65081 TTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGCC 65140 || ||||||| || | | || ||| ||| ||||| | || || ||| | |||| Sbjct 289 TTTCCACCGGGTCCCTGGGGCTTGACATCGCCCTGGGAGTGGGCGGCCTGCCGCGCGGCC 230 Query 65141 GGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGG 65200 | ||||| |||||||||||||| |||||||| || ||| | || || || || | | Sbjct 229 GCGTGGTCGAAATCTACGGCCCGGAATCTTCGGGCAAGACCACGCTCACGCTGCAGGTGA 170 Query 65201 TGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGG 65260 | ||| | ||| ||| ||| ||| ||||| |||||| || || ||| | || | Sbjct 169 TCGCCGAGATGCAAAAGCTCGGCGGCGTGTGCGCCTTCATCGATGCCGAACACGCGCTCG 110 Query 65261 ACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGG 65320 | | | ||||| | |||||| ||| |||| | |||| | | ||||| | Sbjct 109 ATACGCAATACGCGCAAAAGCTCGGCGTGAACCTGCAAGACCTGCTCATCAGCCAGCCCG 50 Query 65321 ACACTGGCGAGCAGGCCCTGGAGATCGTTGA 65351 |||| ||||||||||| ||||| ||||| || Sbjct 49 ACACCGGCGAGCAGGCACTGGAAATCGTCGA 19 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 244046721089708