Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_011056.1 Length=75811 Score E Sequences producing significant alignments: (Bits) Value seq4979 235 3e-57 seq2001 134 7e-27 >seq4979 Length=1283317 Score = 235 bits (260), Expect = 3e-57 Identities = 512/764 (67%), Gaps = 7/764 (1%) Strand=Plus/Minus Query 65943 GCTCTCGGCATCGGGGGGTATCCGAGGGGCCGGGTAGTGGAGATCTACGGTCCTGAGTCT 66002 || || ||| |||| || ||| | |||||||| || || ||||| ||||| || || Sbjct 188353 GCGCTGGGCGTCGGTGGCCTGCCGCGTGGCCGGGTTGTCGAAATCTATGGTCCGGAATCG 188294 Query 66003 TCAGGGAAGTCAACGTTGTGCCTCCACGCGGTGGCC--AATGCCCAGAAGGCCGGTGGCA 66060 || || ||| | ||| | ||||| || | || ||| ||||| ||||| ||| || Sbjct 188293 TCCGGCAAGACCACGCTCTGCCTGCAGGTCGTCGCCGAAATGC--AGAAGCTCGGCGGGG 188236 Query 66061 ACGCCGCCTACATCGACGCCGAACATTCTCTCGACCCTGAGTACGCCGCGGCGCTCGGGG 66120 || |||| || || ||||||||| | ||||| || | || ||| | ||||| | Sbjct 188235 TTGCTGCCTTTATTGATGCCGAACATGCGCTCGATCCGCAATATGCCCAGAAACTCGGCG 188176 Query 66121 TGGATGTCGACAATCTCGTGGTTGTGCAGCCAGACACTGGCGAGCAGGCCCTGGAGATCG 66180 | |||||| | | || || | ||| || || || ||||| ||||| || || |||| Sbjct 188175 TCAATGTCGGCGACCTGCTGATCTCGCAACCGGATACCGGCGAACAGGCGCTCGAAATCG 188116 Query 66181 TTGACCTTCTCGTCAAGTCTGGCGAGGTTTCCATCATCGTTGTGGACTCTGTGGCGGCCC 66240 ||| | || || ||| || ||| |||||| || | ||||| ||||| || | Sbjct 188115 CCGACATGCTGGTGCGGTCCGGGTCGGTCGACATCATTGTCATTGACTCCGTGGCCGCGC 188056 Query 66241 TGGTGCCGCGGGCGGAGCTCGAAGGGGACATCGGGGACTCGCACGTCGGCCTGCATGCCC 66300 | ||||| || || |||| || || || || ||| | || || |||||||||| Sbjct 188055 TCACCCCGCGTGCCGAAATCGAGGGCGAGATGGGCGACCAGATGGTTGGGCTGCATGCCC 187996 Query 66301 GCCTGATGTCTCAGGCCATGCGCAAGCTGACCGGCACGATTGCCAGCACCAACACGCTCA 66360 |||||||| ||||| ||||||||||||||| || || | ||||| ||||| Sbjct 187995 GCCTGATGAGCCAGGCGCTGCGCAAGCTGACCGCCAACATCAAGAAGACCAATACGCTGG 187936 Query 66361 CCCTGTGGGTGAATCAGCTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGA 66420 | | | || ||| | ||| ||||||||| | || | |||| || || | Sbjct 187935 TTGTCTTCATCAACCAGATCCGCATGAAGATCGGTGTCATG---TTCGGCTCGCCGGAAA 187879 Query 66421 CCACCACCGGTGGTAAGGCTCTGCGCTTCTACGCCTCGGTGCGTATGGATGTCCGCAGGA 66480 ||||||||||||| || || || || ||||| |||||||| | || | ||| | | Sbjct 187878 CCACCACCGGTGGCAATGCGCTCAAGTTTTACGCTTCGGTGCGCCTCGACATTCGCCGTA 187819 Query 66481 TCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCA 66540 ||| | | ||| | ||||| || | | |||||| | || || ||||| |||| Sbjct 187818 TCGGCGCGATCAAGAAGGGCGACGAAGTTATCGGCAGCGAAACCAAGGTCAAGGTCGTCA 187759 Query 66541 AGAACAAGCTGGCGCCTCCGCACCGCCAGGCTGAGTTTTCCATCGTCTACGGCGAGGGCA 66600 |||||||| | ||||| || |||| | || || |||| ||||||| ||||| | Sbjct 187758 AGAACAAGGTCGCGCCCCCCTTCCGCGAAGCCATCTTCGACATCCTCTACGGTGAGGGAA 187699 Query 66601 TTTCCCGCGAGGCTGAACTCCTCGACATGGCCGTTTCCCGAGGGCTCATCAAGAAGTCTG 66660 | ||||| ||| ||| || |||| |||| || | | ||| || | || || | Sbjct 187698 TCTCCCGACAGGGCGAAGTCGTCGAAATGGGTGTCGCGCACAAGCTGGTCGACAAATCAG 187639 Query 66661 GGGCCTGGTTCAAGTACGGGGACAAGAACATCGGCCAGGGCAAG 66704 | ||||||| | ||| || | |||| || |||||||||||| Sbjct 187638 GTGCCTGGTACGCCTACAAGGGCGAGAAAATTGGCCAGGGCAAG 187595 >seq2001 Length=3286380 Score = 134 bits (148), Expect = 7e-27 Identities = 439/675 (65%), Gaps = 23/675 (3%) Strand=Plus/Plus Query 65913 ATTCCCACCGGCTCGATAGCTCTGGACGCCGCTCTCGGCATCGGGGGGTATCCGAGGGGC 65972 ||| | ||||| ||| | | ||||| ||| ||||| ||||||| | ||| | || Sbjct 2301316 ATTTCGACCGGGTCGCTGGGATTGGACATCGCGCTCGGAGTCGGGGGCTTGCCGCGCGGA 2301375 Query 65973 CGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCG 66032 ||||| | ||||| | || || ||||| || || ||| | ||| || ||||| Sbjct 2301376 CGGGTGATTGAGATTTTTGGCCCGGAGTCGTCCGGCAAGACGACGATGACGCTCCATTGT 2301435 Query 66033 GTGGCCAATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGAACATTCTCTC 66092 | ||| | | |||||| |||| ||| || |||| |||||| || |||||| | || Sbjct 2301436 ATTGCCGAGGTTCAGAAGACCGGCGGCGTGGCGGCCTTCATCGATGCGGAACATGCCCTG 2301495 Query 66093 GACCCTGAG-TACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTG---CA 66148 || ||| || ||| ||| || ||| | | || | | | ||||| || Sbjct 2301496 GATT-TGACCTATGCCCAAAAGCTGGGAGTGCAGGCAGATGAGTT---GCTTGTGTCCCA 2301551 Query 66149 GCCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGT 66208 ||| || || |||||||||||| |||| |||| ||| || || ||| | | | Sbjct 2301552 GCCGGATACCGGCGAGCAGGCCTTGGAAATCGCTGAGACGCTGGTTCGCAGTGGAGCGAT 2301611 Query 66209 TTCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGA 66268 | | ||||| ||||| || || || || || ||| ||||| || ||||||| || Sbjct 2301612 CGACCTGATCGTGGTGGATTCGGTCGCCGCGCTCACGCCACGGGCTGAAATCGAAGGCGA 2301671 Query 66269 CATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCT 66328 || || || || || | ||| |||| || || || ||||| |||||| |||| ||||| Sbjct 2301672 AATGGGCGATTCTCATATGGGCTTGCAGGCGCGGCTCATGTCGCAGGCCTTGCGTAAGCT 2301731 Query 66329 GACCGGCACGATTGCCAGCACCAACACGCTCACCCTG---TGGGTGAATCAGCTGCGCGA 66385 ||| | | || | | | | ||| || || | | || ||| | ||| Sbjct 2301732 GACGGCTGCTATCTCGAAGTCTCAGACG---ACATTGATTTTCATCAACCAGATCCGCAT 2301788 Query 66386 GAAGATCGGCAACGTGGGCTACGGCCCGAAT---GAGACCACCACCGGTGGTAAGGCTCT 66442 |||||| || ||| | |||| ||| || ||||| ||||| || || || | Sbjct 2301789 GAAGATTGG---GGTGATGTTCGGC---AATCCCGAAACCACGACCGGCGGGAATGCGTT 2301842 Query 66443 GCGCTTCTACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGAAGGAAGGCGA 66502 | ||||| ||||||| || | ||| | ||| | |||| | | || || || | Sbjct 2301843 GAAGTTCTATTCCTCGGTTCGCCTTGATATTCGCCGCATCGAGTCTGTAAAAGAGGGGCA 2301902 Query 66503 TGAGGCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTCCGCA 66562 || | | || ||||| ||| |||||||| ||||| |||||| ||||||| ||| Sbjct 2301903 GGATGTGATGGGGAACCGGGTGCGGGTGAAGGTCGTCAAAAACAAGATGGCGCCGCCGTT 2301962 Query 66563 CCGCCAGGCTGAGTT 66577 |||||||| ||||| Sbjct 2301963 TCGCCAGGCGGAGTT 2301977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242443697644112