Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_011357.1 Length=62147 Score E Sequences producing significant alignments: (Bits) Value seq6557 127 8e-25 seq367 116 1e-21 seq7071 113 2e-20 seq5718 104 9e-18 seq4979 93.3 2e-14 >seq6557 Length=877522 Score = 127 bits (140), Expect = 8e-25 Identities = 616/956 (64%), Gaps = 24/956 (3%) Strand=Plus/Minus Query 16252 CGGCCCATCGAGCGGGGTATCGCCGGACCGGGGCTGCTGGCCCGCGTGCTGACCTCGAAG 16311 ||||| |||| || || || ||||| || || || |||| | || || ||||| Sbjct 492237 CGGCCTATCGCCCGCGGCATGGCCGGCCCCGGTCTATTGGCGCATGTCTTGGTGGCGAAG 492178 Query 16312 TATGCAGAGCACACCCCGCTGTATCGCCAGTCAGAAATATACGGCCGGCAAGGTGTGGAG 16371 ||| || || |||||||| || || | || |||| ||| | || || || Sbjct 492177 TATTGCGATCATCTGCCGCTGTACCGGCAAAGCGGCATTTACGCCCGCGAGGGGGTTGAA 492118 Query 16372 CTGAGGCGTTCACTGCTGTCGGGCTGGGT-GGATGCA-TGCTGCCGGCTGCTGTCTCCGC 16429 ||| || || ||| | |||||||| ||| || ||| ||||||| ||| | Sbjct 492117 CTGGAACGCTCGACACTGGCCGGCTGGGTCGGA--CAGTGCAATATGCTGCTGCGTCCAC 492060 Query 16430 TGGAAGAGGCGCTTCATGGCTATGTCATGACTGACGGCAAACTCCATGCCGATGATACCC 16489 ||| | ||||||||| | || | | | | ||| | || |||||||| || | Sbjct 492059 TGGTCGCGGCGCTTCAGAAGCACGTGCTCTCCGGAGAGAAATTGCACGCCGATGACACGC 492000 Query 16490 CGGTCCAGGTACTGCTGCCGGGTAATAAGAAGACGAAGACCGGGCGGTTGTGGGCGTATG 16549 |||||| ||| || |||||| | |||||||||||||| || ||||| |||||| Sbjct 491999 CGGTCCCGGTGCTTGCGCCGGGCGAAGGAAAGACGAAGACCGGTCGTCTGTGGACGTATG 491940 Query 16550 TTCGTGATGACCGCAATGCAGGGTCAGCGTTGGCACCTGCAGTGTGGTTCGCTTACAGCC 16609 | || |||||||| || || | | |||| || |||||||| |||||| | Sbjct 491939 TGCGCGATGACCGGCCGGCCGGCCAGGAAACGCCACCAGCCGTGTGGTTTGCTTACTCGC 491880 Query 16610 CGGACAGAAAAGGCATCCATCCGCAGACTCATCTTGCCTGCTTCAGCGGTGTGCTGCAAG 16669 || | || || || |||||| | ||| | | |||| ||||| |||| | Sbjct 491879 CGAATCGACGGGGTGAACACCCGCAGGCGCATTTGAAGTCGTTCAAGGGTGTCTTGCAGG 491820 Query 16670 CGGATGCGTACGCCGGGTTCAACGAGCTGTATCGCAATGGTGGGATAA--CG-GAAGCTG 16726 | |||||||| | ||| ||| | | |||||| ||| | |||| || || || |||| Sbjct 491819 CCGATGCGTATGGCGGCTTCGATGCGCTGTA-CGCC--GACGGGACAATCCGAGAGGCTG 491763 Query 16727 CCTGCTGGGCTCATGCCCGCCGAAAGATCCACGATGTGCACGTC-CGCATCCCGTCAGCA 16785 | |||||||| || | || || || || |||| | ||| |||| | ||| | Sbjct 491762 CGTGCTGGGCGCACGTGCGACGTAAATTCTTCGATTTACACAAGGCGCA-CAATTCACCC 491704 Query 16786 CTGACGGAAGAAGCCCTGGAGCAGATCGGTCAGTTGTACGCCATAGAGGCGGATATAAGG 16845 | ||| || || || | || ||| |||||| || || ||||| || || Sbjct 491703 GTTGCGGCGGAGGCGCTCAGACGAATTGGTGCGTTGTATGCGATTGAGGCAACGATTCGG 491644 Query 16846 GGAATGCCGGCAGAGCAGCGGCTTGCTGAA-CGTCAGCGAAAAACGAAACCGTTG-TTGA 16903 || | | || | | |||| | | ||| || || | | | | |||||| ||| Sbjct 491643 GGTAAGTCGCCGCTGGAGCGCCAAG-TGACGCGAGAGGACAGAGCCACTCCGTTGCTTGC 491585 Query 16904 AATCCCTGGAAAGCTGGTTGCGTGAAAAGATGAAGACCCTGTCGCGACACTCAGAGTTGG 16963 | | || | ||| | | |||| | || | |||||||| | | |||| | ||| Sbjct 491584 GAGTC-TGCACGATTGGCTTCAGGAAACGCTGCGCAGCCTGTCGCAAAAATCAGTGCTGG 491526 Query 16964 CGAAGGCG-TTCGCGTACGCACTTAACCAGTGGCCGGCACTGACGTACTATGC--GAACG 17020 | ||||| |||| || || | || | ||| | || || ||| || | | || || Sbjct 491525 CTGAGGCGATTCGT-TATGCCTTGAAACTTTGGGCTGCGCT--CGTGCTTTACACGAGCG 491469 Query 17021 ATGGCTGGGTGGAAATCGACAACAACATCGCTGAAAATGCCCTGCGGGCGGTCAGTCTGG 17080 ||||| | | || ||||| ||||| || ||| | | ||||| | || |||| Sbjct 491468 ATGGCCGAATCGAGATCGATAACAATGCGGCGGAACGTTCTCTGCGAACCGTGGCGCTGG 491409 Query 17081 GTCGTAAAAACTTCCTGTTCTTCGGCTCTGATCATGGTGGTGAGCGGGGAGC-GCTACTG 17139 |||| ||||||||| |||| |||||||||| || |||||||| | || || | | Sbjct 491408 GTCGGAAAAACTTCTTGTTTGCCGGCTCTGATGCGGGCGGTGAGCGCGCTGCTGCGATT- 491350 Query 17140 TACAGCCTGATCGGGACGTGCAAACTGAATGACGTGGATCCAGAAAGCTACCTTCG 17195 |||||||||||||| || |||||| |||| | | ||||| ||| |||||| || Sbjct 491349 TACAGCCTGATCGGTTCGGCCAAACTCAATGGCATCGATCCGGAAGCCTACCTGCG 491294 Score = 93.3 bits (102), Expect = 2e-14 Identities = 217/320 (68%), Gaps = 8/320 (3%) Strand=Plus/Minus Query 16941 CCTGTCGCGACACTCAGAGTTGGCGAAGGCG-TTCGCGTACGCACTTAACCAGTGGCCGG 16999 |||||||| | | |||| | |||| ||||| |||| || || | || | ||| | | Sbjct 128007 CCTGTCGCAAAAATCAGTGCTGGCTGAGGCGATTCGT-TATGCCTTGAAACTTTGGGCTG 127949 Query 17000 CACTGACGTACTATGC--GAACGATGGCTGGGTGGAAATCGACAACAACATCGCTGAAAA 17057 | || ||| || | | || ||||||| | | || ||||| ||||| || ||| Sbjct 127948 CGCT--CGTGCTTTACACGAGCGATGGCCGAATCGAGATCGATAACAATGCGGCGGAACG 127891 Query 17058 TGCCCTGCGGGCGGTCAGTCTGGGTCGTAAAAACTTCCTGTTCTTCGGCTCTGATCATGG 17117 | | ||||| | || |||||||| ||||||||| |||| |||||||||| || Sbjct 127890 TTCTCTGCGAACCGTGGCGCTGGGTCGGAAAAACTTCTTGTTTGCCGGCTCTGATGCGGG 127831 Query 17118 TGGTGAGCGGGGAGC-GCTACTGTACAGCCTGATCGGGACGTGCAAACTGAATGACGTGG 17176 |||||||| | || || | | | |||||||||||| || |||||| |||| | | | Sbjct 127830 CGGTGAGCGCGCTGCTGCGATT-TGCAGCCTGATCGGTTCGGCCAAACTCAATGGCATCG 127772 Query 17177 ATCCAGAAAGCTACCTTCGCCATGTGCTTGGCGTCATAGCAGACTGGCCGGTCAACCGGG 17236 |||| ||| |||||| || || |||| || || || |||||||| || | Sbjct 127771 ATCCGGAAGCCTACCTGCGTTTCGTCATTGGGCGAATCGCGGATCATCCGGTCAATCGCG 127712 Query 17237 TCAGCGAACTGCTTCCGTGG 17256 || ||| |||| || ||| Sbjct 127711 TCGCCGAGTTGCTGCCTTGG 127692 >seq367 Length=21361 Score = 116 bits (128), Expect = 1e-21 Identities = 686/1074 (64%), Gaps = 51/1074 (5%) Strand=Plus/Plus Query 34140 TGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCTGTGTAACTCAGGCTGC--CAGATC 34197 |||| |||||||| ||| | ||||| ||||| ||| | | ||| ||||| ||| | Sbjct 10872 TGAATCGCCCCGGATTTTCCGGAGACTGTTTG-TCT---TGAGTCAAGCTGCATCAGCTG 10927 Query 34198 A-TCGTTTCCGATGGAAGCATAATAAGCTTTTTCTGCTTCTGCCGGAGGAGTATGGCCCA 34256 | || || || | | |||||| || |||| ||||| ||| ||| ||| || | Sbjct 10928 ACTCCCTTA--ATTGGCG-ATAATAGGCCATTTCAAATTCTGACGGCGGAATATTTCCGA 10984 Query 34257 --GCCTTCCCAGCAATCGTCGATTGTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTC 34314 | || |||||| || ||| |||||| |||| || ||||| | || || | || Sbjct 10985 TGGGCT--CCAGCAGTCTTCGGTTGTTAAACCAATCTACCCATTCCAAGGTCGCAAACTC 11042 Query 34315 CACTTCTGCACGGTTTTTCCAGCTCTTACGGTGT---ATTACCTCCGCTTTGTAAAGACC 34371 ||| || | || ||| || ||| || ||||| | ||||| | || Sbjct 11043 CACATCGTCGATATTGCGCCAAGGGCCGCGATGTCGAATAACCTCGGTCTTGTATAATCC 11102 Query 34372 ATTGATGCTCTCAGCCATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGC--C 34429 || || | || |||| || |||||||| || ||||| |||| || || || | Sbjct 11103 GTTAATCGTTTCGGCCAGTGCATTGTCATAAGAATCGCCGATACTGCCAACAGAAGCTTC 11162 Query 34430 AGTAATCCGGCTTCTTTTAGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTA 34489 | || | || || | || |||||||||||| | || | |||||| |||| | Sbjct 11163 AATATTA--GCCTCAATCAGGCGCTCCGTATAGCGAATCGATAAATACTGGCTGCCTCGA 11220 Query 34490 TCGCTGTGATGGATGGTGCCAGACGGA----CGACGGGCCCACAACGCCTGCTCCAGCGC 34545 || |||||||| || || | ||| || || ||||| | |||||| |||| || Sbjct 11221 TCACTGTGATGTATCAATCCTG-CGGTTTCCCGCCGTGCCCATAGCGCCTGTTCCAATGC 11279 Query 34546 ATCCAGCACGAATGTCGTT-TCCATAGACGATGAGACCCGCCACCCCACGATGTATCCGG 34604 ||||||||| | ||||| | || |||| ||| | ||| || |||||||||| | Sbjct 11280 ATCCAGCACCAGATTCGTTCGCAATGTACGA-CTGACTCTCCAGCCAACGATGTATCTTG 11338 Query 34605 CAAACACATCAATGATAAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAA 34664 |||| ||||| | ||||| |||||||| || ||||| ||| || || | |||| Sbjct 11339 CAAATACATCGGTAATAAAAGCCACATAAACAAAGCCAATCCACGTCGCCACAAAGGTAA 11398 Query 34665 AATCAGCCACCCACAGCTGGTCAGGTCGTTCTGCCACGAACTGCGGCTTTACGCGGTCGC 34724 ||| |||||||||| || | || || || || || ||| | || || ||| Sbjct 11399 TATCCGCCACCCACAATTGATTGGGCCGGGAAGCTACAAATTGCCGGTTAACCTTGTCCG 11458 Query 34725 CTG--CGG-CAACGGCTTTCCGGCTG--ATGGTCGTACGGACCTTTTTACCCCGGAGAAC 34779 || ||| ||| || || | | ||||| || | || ||| || || |||| Sbjct 11459 TTGGCCGGTCAA--GCAAATCGTCCGAAATGGTTGTCCAACACTCTTTGCCGCGTCGAAC 11516 Query 34780 ACCGGCAAGTCCCATAACCGCCATGAGACGTGCCACTGTACATCTGGCCACCCTGATTCC 34839 ||| | ||| | | ||| | ||| | || ||||| | || || | || || Sbjct 11517 ACCTTGCATTCCAAGCTTCTTCATCAACCGTTCGACCGTACAACGAGCAACACCAATACC 11576 Query 34840 TTCCCGTAACAACTGACGCCAGACTTTACGCACACCGTACACCTGATGATTTTCATCGTA 34899 ||| || |||||||| ||||| ||||| || |||| || || | ||| || | | Sbjct 11577 TTCTCGCAACAACTGCCGCCATACTTTGCGAGCACCATAAACGCGGAAATTGTCTTTCCA 11636 Query 34900 TACGCGCTGTATCTCTCTCTTCAGCCAGTCGTCGTGC----TGCGCACGGGCACTGCGTT 34955 ||| |||||||| || | | || ||| || |||| | || | | || Sbjct 11637 TACCCGCTGTATATCAAGTTCTAACCTCATGTCCCGCTTAATGCGATCAGGTAAT-CG-- 11693 Query 34956 TATCCGGATGATG-TCG---CTGTTGCTGACAATGGTAATACGTTGACGGGGCAATATGC 35011 |||||||| | ||| || ||| || | ||||| | |||||||||| || Sbjct 11694 -ATCCGGATCTCGCTCGCGTCTTTTG-TG---TTCATAATAACTCGACGGGGCAACCTGT 11748 Query 35012 AGTTCGCTGCATACCGGTCCGACCCCGTACTGCTCACGCAGCTTATCCAGCAGTGGCATC 35071 | | || || || | ||||||| || | | | |||| | | | |||| Sbjct 11749 ATCTGTCTACAGACTGACTCGACCCCATATTCCGCTTTGTTTCTATCAACAAATAACATC 11808 Query 35072 ATTTTTTCCAGAGGCGGTCGAACTCCGCCTTCGCAAAATAAGCGGAAGCCTGGCGAAGGA 35131 || |||| | ||||||||| |||||||| ||||||||||| || |||| || | | Sbjct 11809 ATCATTTCGACCGGCGGTCGAGCTCCGCCTGGGCAAAATAAGCCGATGCCTTACGCAATA 11868 Query 35132 TATCGTTACTGCGGCGCAGTTCACGATTTTCACGTTCCAGCTCTTTCAGACGCT 35185 | ||||| ||| | ||||||||| || ||||||| || || || |||| Sbjct 11869 TCTCGTTGGCGCGCTTTAATTCACGATTCTCCCGTTCCAATTCCTTGAGTCGCT 11922 >seq7071 Length=1310 Score = 113 bits (124), Expect = 2e-20 Identities = 150/208 (72%), Gaps = 3/208 (1%) Strand=Plus/Minus Query 35084 GGCGGTCGAACTCCGCCTTCGCAAAATAAGCGGAAGCCTGGCGAAGGATATCGTTACTGC 35143 ||||||||| ||||||| |||||||||||| || |||| ||| ||||| || || Sbjct 421 GGCGGTCGAGTTCCGCCTGCGCAAAATAAGCCGACGCCTTGCGCAGGATCTCATTCGCCT 362 Query 35144 GGCGCAGTTCACGATTTTCACGTTCCAGCTCTTTCAGACGCTGACGTTCAGCGCTGGTGA 35203 | || || | ||| ||| || |||| |||||| | || | |||||||||||||| Sbjct 361 GTCGGAGCTGACGCACTTCCCGCTCCAACTCTTTGATCCGATCGCGTTCAGCGCTGGT-- 304 Query 35204 GCCCACCATCACCGCCCCCGGTATCCCGCTCATGCTGGCGAACCCAGACACGCAGAGTCT 35263 | |||| || | ||||| | ||| || ||| ||||||||||| | | |||| Sbjct 303 -CGCACCGTCCCGTGCCCCGCTGTCCTTTTCCGCCTGCCGAACCCAGACCCTTAATGTCT 245 Query 35264 CCGGCGTACAGCCAATCTTTGGGGCAAT 35291 | || | ||||||||||| |||||||| Sbjct 244 CTGGGATGCAGCCAATCTTGGGGGCAAT 217 >seq5718 Length=3737 Score = 104 bits (114), Expect = 9e-18 Identities = 259/388 (67%), Gaps = 14/388 (4%) Strand=Plus/Minus Query 34355 TCCGCTTTGTAAAGACCATTGATGCTCTCAGCCATCGCGTTGTCATACGAGTCGCCTGTA 34414 || || ||||| | || |||||| | ||||||| ||||| || || ||||||| | Sbjct 3174 TCGGCCTTGTACAACCCGTTGATGGTTTCAGCCAGTGCGTTATCGTAGCTGTCGCCTTTG 3115 Query 34415 CTCCCTGTTGATGCCAGTAATCCGGCTTCTTTTAGTCGCTCCGTATAGGCCAGTGACACA 34474 || || ||||| | | || |||||| || || ||||| ||| | || || Sbjct 3114 CTGCCAACTGATGGCTCAATGCCAGCTTCTGCCAGCCGTTCCGTGTAGCGAATAGAAACG 3055 Query 34475 TACTGAGAGCCTTTATCGCTGTGATGGATG--------GTGCCAGACGGAC-GACGGGCC 34525 ||||| || || || ||||| || || || ||| |||| || Sbjct 3054 TACTGCGACCCACGGTCCGAATGATGAATCAGGCTGTTGTCCCGTTCGGGTTGACGTGCA 2995 Query 34526 CACAACGCCTGCTCCAGCGCATCCAGCACGAATGTCGTTTC-CATAGACGATGAGACCCG 34584 | | |||||| ||||||||||| || || || ||| ||| ||| || |||||| Sbjct 2994 TAGAGCGCCTGTTCCAGCGCATCAAGAACAAA-GTCTGTTCTCATCGAACGGCTGACCCG 2936 Query 34585 CCACCCCACGATGTATCCGGCAAACACATCAATGATAAACGCCACATAGACGAAGCCCTG 34644 ||| || ||||| | |||||| |||||||| | || ||||||||||| ||||| Sbjct 2935 CCAACCGACGATCCGACGGGCAAAGACATCAATCACGAAGGCCACATAGACAAAGCCTGC 2876 Query 34645 CCATGTGCTGACGTAAGTAAAATCAGCCACCCACAGCTG-GTCAGGTCGTTCTGCCACGA 34703 ||| ||| || || |||||||| | |||||| ||||| || || || || ||| || Sbjct 2875 CCACGTGGACACATACGTAAAATCCGACACCCAGAGCTGATTCTGGCCGATCCGCCTTGA 2816 Query 34704 ACTGCGGCTTTACGCGGTCGCCTGCGGC 34731 | ||| | || || || | |||||||| Sbjct 2815 ATTGCCGGTTGACCCGAT--CCTGCGGC 2790 >seq4979 Length=1283317 Score = 93.3 bits (102), Expect = 2e-14 Identities = 217/320 (68%), Gaps = 8/320 (3%) Strand=Plus/Plus Query 16941 CCTGTCGCGACACTCAGAGTTGGCGAAGGCG-TTCGCGTACGCACTTAACCAGTGGCCGG 16999 |||||||| | | |||| | |||| ||||| |||| || || | || | ||| | | Sbjct 48 CCTGTCGCAAAAATCAGTGCTGGCTGAGGCGATTCGT-TATGCCTTGAAACTTTGGGCTG 106 Query 17000 CACTGACGTACTATGC--GAACGATGGCTGGGTGGAAATCGACAACAACATCGCTGAAAA 17057 | || ||| || | | || ||||||| | | || ||||| ||||| || ||| Sbjct 107 CGCT--CGTGCTTTACACGAGCGATGGCCGAATCGAGATCGATAACAATGCGGCGGAACG 164 Query 17058 TGCCCTGCGGGCGGTCAGTCTGGGTCGTAAAAACTTCCTGTTCTTCGGCTCTGATCATGG 17117 | | ||||| | || |||||||| ||||||||| |||| |||||||||| || Sbjct 165 TTCTCTGCGAACCGTGGCGCTGGGTCGGAAAAACTTCTTGTTTGCCGGCTCTGATGCGGG 224 Query 17118 TGGTGAGCGGGGAGC-GCTACTGTACAGCCTGATCGGGACGTGCAAACTGAATGACGTGG 17176 |||||||| | || || | | | |||||||||||| || |||||| |||| | | | Sbjct 225 CGGTGAGCGCGCTGCTGCGATT-TGCAGCCTGATCGGTTCGGCCAAACTCAATGGCATCG 283 Query 17177 ATCCAGAAAGCTACCTTCGCCATGTGCTTGGCGTCATAGCAGACTGGCCGGTCAACCGGG 17236 |||| ||| |||||| || || |||| || || || |||||||| || | Sbjct 284 ATCCGGAAGCCTACCTGCGTTTCGTCATTGGGCGAATCGCGGATCATCCGGTCAATCGCG 343 Query 17237 TCAGCGAACTGCTTCCGTGG 17256 || ||| |||| || ||| Sbjct 344 TCGCCGAGTTGCTGCCTTGG 363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 198723712892368