Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq3957 109 5e-19 seq1112 86.0 6e-12 seq2057 82.4 7e-11 >seq3957 Length=668572 Score = 109 bits (120), Expect = 5e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 126924 CTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGA 126983 |||| ||||| ||||| || || |||||| ||| || |||||||| |||||| ||| Sbjct 478876 CTTTCTGAATGTTGTAGTCTGACAATGTGCGACCATCCTCAAGCTGTTTGCCAGCGAAGA 478817 Query 126984 TCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTT 127043 ||| |||||||||||| || || |||||||| ||||| ||| || ||| | | | Sbjct 478816 TCAGTCGCTGCTGATCAGGTGGAATGCCCTCTTTGTCTTGGATCTTGGCCTTCACATTAT 478757 Query 127044 CGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 127103 ||| ||||| | | ||| || || | ||| | || || || || | |||||||| | Sbjct 478756 CGATTGTGTCTGAAGGCTCAACCTCTAAGGTTATGGTCTTCCCTGTTAATGTTTTTACGA 478697 Query 127104 AAATCTGCAT 127113 | |||||||| Sbjct 478696 AGATCTGCAT 478687 >seq1112 Length=3255245 Score = 86.0 bits (94), Expect = 6e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | ||||| || || ||||||||||| ||| | ||||| ||| || Sbjct 2620703 ACCAAGTGAAGGGTAGATTCCTTCTGAATATTGTAGTCGGAAAGGGTGCGGCCATCCTCA 2620762 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 ||||| || || ||| ||||||| |||||||| || || || || || ||||||||| | Sbjct 2620763 AGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCTGGGGGGATTCCTTCCTTGTCCTGG 2620822 Query 127025 ATTTT 127029 ||||| Sbjct 2620823 ATTTT 2620827 >seq2057 Length=842785 Score = 82.4 bits (90), Expect = 7e-11 Identities = 136/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 146617 TTGACGCACTTGTTGACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCG 146676 ||||| || |||||| |||| || || | |||||| || || ||| || | Sbjct 607739 TTGACATACATGTTGAGAGCGAGGGAAGCAAGGTTACACACTGCCACCTCATCAGGAGAG 607798 Query 146677 CAATACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGG 146736 | |||| ||||||||| | |||||| ||||||||||||||| |||| | || | |||| Sbjct 607799 CTGTACTCCACAATCTCAGTGCAGAGATTGCTGCACTTGATGGTGCCAAGGTTCTGTTGG 607858 Query 146737 TTACTAAACTT---GTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACA 146793 | | |||| |||||| | || |||||||||||||| || || ||||| || Sbjct 607859 T---TGGACTTGCGGTTGCATGCATCTTTGTAGAGCATGTAGGGAGTGCCTGTTTCCACC 607915 Query 146794 TTGGTCTCGACGATG 146808 | || || | |||| Sbjct 607916 TGGGACTGAATGATG 607930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475447092184640